Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1451
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 30 0.25
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 4.1
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 4.1
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.2
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 7.2
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.2
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 9.5
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 25 9.5
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 25 9.5
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 287 NAHQEKLRNMLLEQVKDYQ---YRVPVVQSSFGGNHARGWELGAGAPLDPVKRAYDPMLQ 117
N H + LRN E KD+Q + + ++FG N R W + AP D + Y +Q
Sbjct: 121 NFHGKSLRNQYKELYKDWQGSPFFFALFSNAFGENQCRNW-IQHLAPFDYLPVRY-ANVQ 178
Query: 116 TNII 105
+N+I
Sbjct: 179 SNLI 182
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -1
Query: 335 DYLRAHYAQNMKAAEENAHQEK----LRNMLLEQV-KDYQYRVP 219
D L AHY Q +E +AH +K L M LE + D++ R P
Sbjct: 103 DILLAHYLQKHPGSEVDAHSQKRILGLERMTLELICFDFRVRHP 146
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 115 VWSIGS*ARLTGSRGAP---APSSQPRAWLPPNEDWTTGTRYW 234
+WS+ S R+ S GAP +SQP +P E + +Y+
Sbjct: 48 MWSLPSNVRVISSHGAPGHQTSASQPSTVMPALETNASNAQYY 90
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 266 RNMLLEQVKDYQYRVPVVQSSFGGNHARGWELGAGAPLD 150
RN+L E + +PVV+ N+AR ++G G+ D
Sbjct: 119 RNLLFEPCPYLKEVMPVVEKGIKTNNARVLDIGCGSGRD 157
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 396 GGNDDEGRSYIFLRRNQIQFGLSPRALRAEHEGCRGERSPGE 271
G D G S N FGL P LR +GC+G S E
Sbjct: 223 GIGSDIGGSIRSPAANNGLFGLRPSTLRLSRKGCQGAVSGQE 264
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 211 SPRSEVTTRAAGSSAPAPPWTPSNAPTT 128
SP + TT+A + P P T + PTT
Sbjct: 928 SPNTVTTTKATTTFTPTPTTTTTPTPTT 955
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 232 STAFRWSSPRSE---VTTRAAGSSAPAPPWTPSN 140
+T+ R S SE TT A+ SAPAPP PS+
Sbjct: 108 ATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSS 141
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 260 MLLEQVKDYQYRVPVVQSSFGGNHARGWELGAGAPLDPVKRAYDPMLQTNIISTSDYDRD 81
M ++Q Y Y Q+ G G+ AG +P+ +YDP+ ++ SDY++
Sbjct: 1330 MQMQQQTPYGYN----QTGMEGYSEYGYAQPAGNMANPM--SYDPVSNASLYMPSDYNQQ 1383
Query: 80 GQ 75
Q
Sbjct: 1384 TQ 1385
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 479 YTPMEMAEYVFWTGDER-GVTTAIEVFLQEGMMTKEEAISFLEEIKFNL 336
Y + + +Y +W V A+ + E +TKEE LEEI+ N+
Sbjct: 387 YNAIVLNDYAYWIQTANDNVLAALAYQVSECTITKEETNWPLEEIEANV 435
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 214 SSPRSEVTTRAAGSSAPAPP 155
SSP++E +T G S P PP
Sbjct: 306 SSPQAETSTTKTGFSRPRPP 325
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = -1
Query: 365 SFLEEIKFNLDYLRAHYAQNMKAAEENAHQEKLRNMLLEQVKDYQYRVPVVQSS 204
SF+ + KF D ++ + + E N H+ + +E + D + P S+
Sbjct: 583 SFIGQGKFGADAIQRRAVEELNIEEANVHEAIEKGANVENLLDLDFTDPGATSA 636
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -1
Query: 446 WTGDERGVTTAIEVFLQEGMMTKEEAISFLEEIKFNLDYLRAHYAQNMKAAEENAH---- 279
WTG ++ ++ V +EG +E FL I L + Q +E ++
Sbjct: 81 WTGSTNNLSHSVHVLRKEGHKCSKEFDPFLHGIPIPQKALNIYEKQRSLFSESISNYLVL 140
Query: 278 QEKLRNMLLEQVKDYQY 228
Q KLR + +K Y +
Sbjct: 141 QYKLRYFPVFDLKIYDF 157
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -1
Query: 512 FSPANTAAGVQYTPMEMAEYVFWTGDERGVTTAIEVFLQEGMMTKEEAISFLEEIKFNLD 333
F GV T E + GDE + FL+ KEE +FL IK +++
Sbjct: 182 FGVKEVIVGVSGTKNENGRTLIILGDELLKKKVQKEFLENIQKRKEEVSNFLHSIKEDIN 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,553
Number of Sequences: 5004
Number of extensions: 41761
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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