Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1451
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0921 + 9075409-9075511,9075606-9075689,9075744-9075806,907... 31 0.60
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 1.4
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 29 2.4
11_01_0700 + 5764149-5764979 29 4.2
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894... 28 5.6
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 5.6
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 5.6
11_03_0027 + 9078792-9079613 28 7.4
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 28 7.4
09_04_0041 - 14051870-14052430,14052509-14052562 27 9.8
07_03_0097 + 13372270-13372399,13372958-13373457 27 9.8
>08_01_0921 +
9075409-9075511,9075606-9075689,9075744-9075806,
9077163-9077181,9078227-9078338,9078902-9078949,
9079372-9079502,9079673-9079757,9079776-9079784
Length = 217
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 179 WELGAGAPLDPVKRAYDPMLQTNIISTSDYDRDGQIITDEEYEEMM--DKLKAADTL 15
W+LG + P R Y P Q I D D + EE+ ++ D+LK A L
Sbjct: 81 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVTAKEEFHAILEEDELKGAVVL 137
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -2
Query: 217 WSSPR---SEVTTRAAGSSAPAPPWTPS 143
W SP + + A+G +PAPPW PS
Sbjct: 52 WPSPNPVTASASASASGGCSPAPPWAPS 79
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = +3
Query: 3 VFRVQSISCLQFVHHLLVLLIGDDLAVAVVVRCADNVCLEHRVVGAFDGVQGGAGAELPA 182
V R QS+ L+ V H L+ L+G A AV V L + A D G L
Sbjct: 121 VDRYQSVRPLEAVSHRLLALLG---ATAVFVAAKYEGDLPEERLSAGDAAAGAGAGGLAI 177
Query: 183 ARVVTSERGLDHRNAV 230
AR +R LD +A+
Sbjct: 178 ARSEVLDRELDLLDAL 193
>11_01_0700 + 5764149-5764979
Length = 276
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 217 WSSPRSEVTTRAAGSSAPAPPWTPSNAPTTRCS 119
W PR + + APPW P++ P + S
Sbjct: 229 WLQPRGPLVAHRRRDAVRAPPWRPTHTPLSLLS 261
>05_06_0022 +
24988363-24988453,24989102-24989325,24989433-24989494,
24990219-24990440,24990740-24990869,24991373-24991698,
24991910-24992051,24992169-24992414
Length = 480
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -1
Query: 431 RGVTTAIEVFLQEGMMTKEEAISFLEEI-KFNLDYLRAH-----YAQNMKAAEENAHQEK 270
+G I F Q + + F+EE+ K L Y H Y + E A + K
Sbjct: 57 KGYEENIFAFFQNSQDPETLIVKFIEELDKCILGYFSFHWNYATYIISQVLTVEGAPKRK 116
Query: 269 LRNMLLEQVKDYQY 228
LRNM+LE + ++
Sbjct: 117 LRNMVLEATRKQRF 130
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = -1
Query: 521 VEHFSPANTAAGVQYTPMEMAEYVFWTGDERGVTTAIEVFLQEG--MMTKEEAISFLEEI 348
+EH+ NT G +P+E + + DE + + + G + EA S L E+
Sbjct: 1581 MEHYQATNTPRGSSKSPLEKCNFNGF--DENNLPQELSIMCDHGSKLAFCPEAKSHLLEM 1638
Query: 347 KFNLDYLRAHYAQNMKAAEENAHQEKLRNMLLEQVK 240
K NL + + +++ + R +L +Q++
Sbjct: 1639 KDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIE 1674
>01_06_1097 + 34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = -1
Query: 263 NMLLEQVKDYQYRVPVVQSSFGGNHARGWELGAGAPLDPVKRAYDPMLQTNIISTSDYDR 84
NM + +++ P+V G GW LGA DP + Y+P + I+ S ++
Sbjct: 1012 NMKYASMLEHEENSPLVDDLNGTGPEFGWSLGASYD-DPEQTVYNP--RRRILGASRFEE 1068
Query: 83 DGQIITDEEYEEMMDKLKAA 24
T+ E + + D+ +A+
Sbjct: 1069 -----TNTEMKPLFDETEAS 1083
>11_03_0027 + 9078792-9079613
Length = 273
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 268 SGTCS*NRSRITSTAFRWSSPRSEVTTRAAGSSAPAPP 155
S T S + S +T+TA S+P S VT +S+P PP
Sbjct: 48 SNTTSSSSSSVTTTA---STPNSPVTPAPVTASSPPPP 82
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = -1
Query: 113 NIISTSDYDRDGQIITDEEYEEMMDKLKAADTLYTE 6
NI+S +D+ ++ Q + +EE +++ ++ A+ Y+E
Sbjct: 214 NILSETDFQKERQKVIEEEEKKLKAAIEEAEKQYSE 249
>09_04_0041 - 14051870-14052430,14052509-14052562
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 215 PPERGTGNP*PVLGACS*ASPGERSPLQPSCSARSARGDSP 337
PP+RG G P A + A+ +P P+ S+ RG P
Sbjct: 87 PPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPP 127
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 461 PSPSXCTGHRLLCSPVKSVP 520
P+PS C+ H CSP S P
Sbjct: 113 PAPSSCSSHGCSCSPSNSSP 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,299
Number of Sequences: 37544
Number of extensions: 363911
Number of successful extensions: 1664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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