Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1451
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.63 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.63 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.84 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 227  RVPVVQSSFGGNHARGWE----LGAGAPLDPVKRAYDPMLQTNIISTSDYDRDGQIITDE 60
            RVP   +SFGG+  R W     L   A  DP +  Y    Q   I T D  R+ QI+   
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRT-DSTRNIQILPSG 1367

Query: 59   EYEEMMDKLKAAD 21
            E   M+  L++ D
Sbjct: 1368 EL--MLSNLQSQD 1378


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 227  RVPVVQSSFGGNHARGWE----LGAGAPLDPVKRAYDPMLQTNIISTSDYDRDGQIITDE 60
            RVP   +SFGG+  R W     L   A  DP +  Y    Q   I T D  R+ QI+   
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRT-DSTRNIQILPSG 1363

Query: 59   EYEEMMDKLKAAD 21
            E   M+  L++ D
Sbjct: 1364 EL--MLSNLQSQD 1374


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 170 GAGAPLDPVKRAYDPMLQTNIISTSDYDRDGQII---TDEEYEEMMDKLKAADTLYTE 6
           G G P+  V +A DPM  T  +  +D   D  II   +D+ +  +  K    D  Y+E
Sbjct: 185 GMGGPVSLVVQAMDPMNTT--VYIADDRGDALIIYQNSDDSFHRLTSKTFDNDLRYSE 240


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 YLRTRTGPPERGTGNP*PVLGACS 265
           Y  T  GPPE  TG+  PV  A +
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAAA 38


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 YLRTRTGPPERGTGNP*PVLGACS 265
           Y  T  GPPE  TG+  PV  A +
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAAA 38


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 YLRTRTGPPERGTGNP*PVLGACS 265
           Y  T  GPPE  TG+  PV  A +
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAAA 38


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 269 ASPGERSPLQPSCSARSARGDS 334
           A P  R   +P C  +++RGD+
Sbjct: 2   ACPFSRDLSKPGCDEQTSRGDN 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,455
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)