Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1448
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 236 3e-63
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 117 2e-27
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 2e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 65 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 3e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 1e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 27 2.3
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 26 5.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 236 bits (577), Expect = 3e-63
Identities = 115/165 (69%), Positives = 126/165 (76%)
Frame = -3
Query: 792 DIKXKLCYVXXDFEQXMAXXASSRFPRKVLRTSPTVRSSLSETKDSVAQRLSFQPSFLGM 613
DIK KLCYV DFEQ + A S K ++ + + L FQPS LG+
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEAL-FQPSALGL 269
Query: 612 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 433
E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKI 329
Query: 432 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 298
+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKC
Sbjct: 330 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKC 374
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 117 bits (282), Expect = 2e-27
Identities = 60/164 (36%), Positives = 92/164 (56%)
Frame = -3
Query: 792 DIKXKLCYVXXDFEQXMAXXASSRFPRKVLRTSPTVRSSLSETKDSVAQRLSFQPSFLGM 613
+IK K CYV DF + + P+ P ++ T+ A + F P +G
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHK-PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGS 274
Query: 612 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 433
EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKI 334
Query: 432 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 301
A PER ++ W+GGSILASLSTF+++ I+ +EY I R+
Sbjct: 335 YASPERMHNAWLGGSILASLSTFRRLLITSEEYKNDQNVIFRRR 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -3
Query: 603 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 430
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 429 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 322
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 697 FPDGQVITIGNERFRCPEAXF 635
FPDG G ERFR E F
Sbjct: 283 FPDGVTHKFGQERFRISEILF 303
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 603 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 424
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 423 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 298
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 715 SKSXTNFPDGQVITIGNERFRCPEAXF 635
++S FPDG + G ER++ PE F
Sbjct: 260 AESEFEFPDGSRMMFGAERYQIPEHLF 286
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.1 bits (216), Expect = 2e-19
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Frame = -3
Query: 792 DIKXKLCYVXXDFEQXMAXXASSRFPRKVLRTSPTVRSSLSETKDSVAQRLSFQPSFLGM 613
++K KLCYV D E + + T P R ++ FQP +G
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNY-TLPDGRVIKVGSERYECPECLFQPHLVGS 269
Query: 612 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------A 457
E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGD 329
Query: 456 PSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 322
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 330 PARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 64.9 bits (151), Expect = 1e-11
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Frame = -3
Query: 789 IKXKLCYVXXDFEQXMAXXASSRFPRKVLRTSPTVRSSLSETKDS-----VAQRLSFQPS 625
IK + CYV D + + R P + L+ + + S T D +A + F P
Sbjct: 240 IKEECCYVCPDIVKEFSRF--DREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPE 297
Query: 624 FLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST 448
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 298 IASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDER 357
Query: 447 --------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 310
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI
Sbjct: 358 IHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIA 417
Query: 309 HR 304
R
Sbjct: 418 RR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/109 (24%), Positives = 56/109 (51%)
Frame = -3
Query: 636 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 457
F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T++
Sbjct: 603 FSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIM 662
Query: 456 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 310
P I + W G S + F+ ++++EY E GP +
Sbjct: 663 PVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/114 (29%), Positives = 54/114 (47%)
Frame = -3
Query: 642 LSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 463
L F PS + + GI E S+ +I+ L N V GG +PG R+ E+ +
Sbjct: 286 LLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRS 345
Query: 462 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 301
LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 346 LAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 379
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 378 SLSTFQQMWISKQEYDESGPSIVHRK 301
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 402 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 301
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 224 NGDYKPELSSRPRAAGGSDARCVXKHFLCTMEGPDSSYSC 343
NG Y +++ P+ AG +C H L ME + +SC
Sbjct: 225 NGAYVEQMNQIPKLAG----KCTGDHMLINMEWGATDFSC 260
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 725 AGSLEKXYELPRRSGHHYRKRKI 657
+GS E+ EL RR+G+H+R +
Sbjct: 242 SGSFEELLELCRRTGNHWRSASL 264
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 410 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 315
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 477 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 367
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 520 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 341
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 340 GV 335
V
Sbjct: 534 AV 535
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = -3
Query: 678 SLSETKDSVAQRLSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 499
+L + V + LS Q + E+ + CD+D ++ + + T ++P
Sbjct: 138 TLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNLFP 194
Query: 498 GIADRMQKEITALAPSTMKIKIIAPPERKYS 406
AD I ++K A RKYS
Sbjct: 195 AFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,464
Number of Sequences: 5004
Number of extensions: 57659
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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