Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1448
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             206   2e-55
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.82 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  206 bits (503), Expect = 2e-55
 Identities = 96/97 (98%), Positives = 97/97 (100%)
 Frame = -3

Query: 636 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 457
           FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 96

Query: 456 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 346
           PSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 97  PSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 48.4 bits (110), Expect = 8e-08
 Identities = 21/26 (80%), Positives = 21/26 (80%)
 Frame = -2

Query: 694 PDGQVITIGNERFRCPEAXFPTXVLG 617
           PDGQVITIGNERFRCPEA F    LG
Sbjct: 18  PDGQVITIGNERFRCPEALFQPSFLG 43


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -3

Query: 582 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 403
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 402 WI 397
           WI
Sbjct: 397 WI 398


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 529 RIVRWYHHVPWNRRPYAK 476
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 529 RIVRWYHHVPWNRRPYAK 476
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,434
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)