Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1447
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   262   5e-71
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.3  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   7.2  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  262 bits (641), Expect = 5e-71
 Identities = 120/184 (65%), Positives = 148/184 (80%)
 Frame = -1

Query: 713 PXPQFKATAVVNXEFKDIXLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 534
           P P FK TAVVN  F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   
Sbjct: 8   PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67

Query: 533 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLF 354
           +V+  STDS ++HLA+INTPRK+GGLG +NIP ++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68  QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127

Query: 353 IIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAA 174
           +ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI  DTK  
Sbjct: 128 LIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNP 185

Query: 173 QEYF 162
           ++YF
Sbjct: 186 EKYF 189


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 338 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 168
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 202 LAPGLQLAGHTSPCLSVNW 258
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,297
Number of Sequences: 5004
Number of extensions: 40910
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)