Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1447
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   303   1e-82
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   259   1e-69
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    70   2e-12
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    31   1.3  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    31   1.3  
AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-li...    29   3.9  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    28   6.8  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  303 bits (743), Expect = 1e-82
 Identities = 139/184 (75%), Positives = 155/184 (84%)
 Frame = -1

Query: 713 PXPQFKATAVVNXEFKDIXLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 534
           P PQFK  AVV+ EF D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I  
Sbjct: 9   PAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAINT 68

Query: 533 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLF 354
            VL ASTDS F+HLAWIN PRK GGLG MNIP ++D +H+ISRDYGVL E+ GI FRGLF
Sbjct: 69  VVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLF 128

Query: 353 IIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAA 174
           IID  QNLRQITINDLPVGRSV+ETLRLVQAFQF +KHGEVCPA W PG+ TIKP  K +
Sbjct: 129 IIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKES 188

Query: 173 QEYF 162
           QEYF
Sbjct: 189 QEYF 192


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  259 bits (635), Expect = 1e-69
 Identities = 112/186 (60%), Positives = 147/186 (79%)
 Frame = -1

Query: 707 PQFKATAVVNXEFKDIXLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEV 528
           P FK TAVV+ +FK I   DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+EFR +G EV
Sbjct: 40  PAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEV 99

Query: 527 LGASTDSHFTHLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLFII 348
           +  S DSHF+HLAW+NTPRK GGLG M+IP ++D + +I+  +GVLD+E+G+ +RGLF+I
Sbjct: 100 VACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLI 159

Query: 347 DDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 168
           D    +R  T NDLPVGRSV+ETLR+++AFQF+DKHGEVCPA+W   + TIKP    ++E
Sbjct: 160 DPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHEDSPTIKPGVATSKE 219

Query: 167 YFGDAN 150
           YF   N
Sbjct: 220 YFNKVN 225


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
 Frame = -1

Query: 668 KDIXLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 492
           K+  L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 491 AW---INTPRKQGGLGP-MNIPXISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 342
            W   IN+  +    G  +    I+D    I  + G++D      E   +  R + +   
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137

Query: 341 KQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 195
            + L+   +     GR+  E LR+V   Q   K     PANW  G   I
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANWIAGDNVI 186


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/90 (24%), Positives = 44/90 (48%)
 Frame = -1

Query: 500 THLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 321
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 320 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 231
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/90 (24%), Positives = 44/90 (48%)
 Frame = -1

Query: 500 THLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 321
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 320 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 231
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/90 (24%), Positives = 44/90 (48%)
 Frame = -1

Query: 500 THLAWINTPRKQGGLGPMNIPXISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 321
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 320 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 231
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical
           protein W03F11.5b protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 249 RELEGLHQPQGLLHRPPHGQVVDGDLPEVLLVVDDEXSSEGDARLLVQHSVVARDAVRLV 428
           + L G+  P  L  RP + Q+ DG+  + + +VDD      +  + V+ S +  D+ R  
Sbjct: 79  KTLAGIQMPFSLTGRPMNLQI-DGESHDAVSLVDDPKKRNNEKSMEVRRSDMTPDSRRAF 137

Query: 429 AYXRNVHGTESA 464
              R V   +SA
Sbjct: 138 LRARQVCLEQSA 149


>AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical
           protein W03F11.5a protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 249 RELEGLHQPQGLLHRPPHGQVVDGDLPEVLLVVDDEXSSEGDARLLVQHSVVARDAVRLV 428
           + L G+  P  L  RP + Q+ DG+  + + +VDD      +  + V+ S +  D+ R  
Sbjct: 113 KTLAGIQMPFSLTGRPMNLQI-DGESHDAVSLVDDPKKRNNEKSMEVRRSDMTPDSRRAF 171

Query: 429 AYXRNVHGTESA 464
              R V   +SA
Sbjct: 172 LRARQVCLEQSA 183


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +1

Query: 154 ASPKYSCAALVSGLMVLAPGLQLAGHTSPCLSVNWKACTSRRVSSTDLPTGRSLMVICLR 333
           AS +YSC+   S     A   Q    TS C+    ++C+ +  S+T+     +    C  
Sbjct: 43  ASQQYSCSCQPSTPCSCASSQQYQLQTSQCMPACQQSCSQQCQSNTNTQCQPTCQQSCQT 102

Query: 334 FCLSSMMXSPRKGMPVSSSSTP*SREMRC 420
              + M  +P   +P S S  P   E RC
Sbjct: 103 SSCNPMTSTP---IPASQSCLP-ECENRC 127


>U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-like
           protein protein16 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/90 (22%), Positives = 30/90 (33%)
 Frame = -3

Query: 456 RSHEHSXDKRQVAPHLSRLRSAGRGDGHPLPRTXHHRRQAEPQADHHQRPARXXXXXXXX 277
           RS EH   KR    H    ++    +GH + +  HH  +      HH    R        
Sbjct: 110 RSTEHHRVKRSEG-HPHEKKATHSPEGHIVAKDDHHGHEKRSSDSHHGHQKRSVDEHHGH 168

Query: 276 XXXXGLPVHGQARRGVPRQLEARRQDHQAR 187
                   H   +R    + +A   +HQ R
Sbjct: 169 QKKNAEDHHEHQKRSEHVEHQAEMHEHQKR 198


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
 Frame = -3

Query: 375 HPLPRTXHHRRQAEPQADHHQRPARXXXXXXXXXXXXGLPVHGQARRGVPRQLEAR---- 208
           H   +   H++Q E Q    Q+  R                H QA++   +Q  A+    
Sbjct: 644 HQAQQAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQP 703

Query: 207 RQDHQARHQGRAGVLRRRQLAH 142
            QDH   H+ R    RRR+  H
Sbjct: 704 SQDHHEEHRRRLEEHRRREEEH 725


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
 Frame = -3

Query: 375 HPLPRTXHHRRQAEPQADHHQRPARXXXXXXXXXXXXGLPVHGQARRGVPRQLEAR---- 208
           H   +   H++Q E Q    Q+  R                H QA++   +Q  A+    
Sbjct: 644 HQAQQAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQP 703

Query: 207 RQDHQARHQGRAGVLRRRQLAH 142
            QDH   H+ R    RRR+  H
Sbjct: 704 SQDHHEEHRRRLEEHRRREEEH 725


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 338 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 204
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 338 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 204
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,585
Number of Sequences: 27780
Number of extensions: 255307
Number of successful extensions: 976
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)