Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1445
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -3

Query: 714 VFTNVRLRSHTYPISFLY*LVKHFQ*YGLLSKALGVDFILIVIICVNVSPKYGSDTLINL 535
           +F  V L   T  ISFL  LV +          LG+  +L +++ + +  K    T + L
Sbjct: 234 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 293

Query: 534 GYCLRSLVSTFLQRTPAI 481
               + L+ TF+  T +I
Sbjct: 294 PLIAKYLLFTFIMNTVSI 311


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 358 LSNESPHQNPRLSWNRTHNNETI*KYCA*INYNNH 462
           LSN++ H N    +N  +NN     Y    NYNN+
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNN--NYNNN 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,338
Number of Sequences: 438
Number of extensions: 3980
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)