Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1442
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   4.3  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    28   7.5  
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11...    28   9.9  

>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 756  IKTEKILEACGESN*NSTPSIKINHRFWFYWENLTVNSI 640
            ++TE +L + G+S+ N+ PS+       F W  L VN I
Sbjct: 1893 VQTENVLPSTGDSSSNALPSVDAK----FLWSTLPVNRI 1927


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 587 FGLKFFAFVKDRFAFMGLFKIARIFCLDFYLP--IKNFSPIYLIVI 456
           FGLKF+  V   FA  G    A+++C +   P  +  F+P+  I++
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLWCTEKKGPVFVTMFNPLSTIMV 337


>07_01_0017 -
           114497-114547,114700-114816,114917-114997,115312-115371,
           116029-116238,116412-116720,116790-117080
          Length = 372

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 428 PTHFQEGTVILFVDAIGTGSAFSLASTTIGALFYQYY*FKQH 303
           P H   G ++L V AIG   AF  +   IG L  +   F  H
Sbjct: 243 PLHVLHGIIVLCVSAIGCPDAFIHSVQEIGPLKIERLDFSDH 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,871
Number of Sequences: 37544
Number of extensions: 321571
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)