Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1440
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0511 + 11072699-11073146,11076148-11076365                       29   2.8  
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156           26   4.4  
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993...    28   5.0  

>02_02_0511 + 11072699-11073146,11076148-11076365
          Length = 221

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 335 GTCQPSPLFIVPPPNXKAKR-FWAGGVNVE 249
           G C P P F  PP + +A+  FW GG   E
Sbjct: 161 GPCMPFPYFNQPPCDNRAQYWFWDGGYTTE 190


>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
          Length = 598

 Score = 25.8 bits (54), Expect(2) = 4.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 191 SHSR-ALGIXF--HPRRTGXQRPPHLRPQP 271
           +HSR A+G+ F    R +    PPH RPQP
Sbjct: 237 AHSRGAMGLCFGIDTRSSPPPSPPHPRPQP 266



 Score = 21.0 bits (42), Expect(2) = 4.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 248 PPHLRPQPKIFW 283
           PPH RP P   W
Sbjct: 284 PPHPRPPPPPCW 295


>02_01_0015 -
           98311-98412,98635-98707,98830-98921,99139-99230,
           99363-99432,99683-99781,100008-100093,100541-100655,
           100853-100918,101064-101143,101226-101301,101915-102151,
           102559-102590,102993-103047,103384-103498,104497-104579,
           105182-105232,105740-105802,105945-106010,106144-106279,
           106503-106591,106844-106964,107138-107340,107434-107820
          Length = 862

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 348 HQNNKSPGLLKEXKNPFYPRYFRKHLMG 431
           HQ NK   L K  KN    RY R +L G
Sbjct: 339 HQKNKKKPLEKHFKNSMLTRYLRDYLEG 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,427
Number of Sequences: 37544
Number of extensions: 307426
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)