Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1436
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 254 KIILDIWYVKGYKSKNLSYKSRNYKIPYLYRI 349
           KII  +     Y + N +YK  +Y I Y+ +I
Sbjct: 313 KIISSLSNNYNYNNYNNNYKPLHYNINYIEQI 344


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 IYKKDLIIIS*SCXLTR 397
           ++ +DLII+   C +TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 251 KKIILDIWYVKGYKSKNLSYKSRNYKIPYLYRIY 352
           +KII  +     Y + N  Y   NY     Y+ Y
Sbjct: 312 RKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNY 345


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 IYKKDLIIIS*SCXLTR 397
           ++ +DLII+   C +TR
Sbjct: 220 MFNRDLIIVQTGCTITR 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,310
Number of Sequences: 438
Number of extensions: 1475
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)