Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1428
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961     28   4.6  
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820...    27   8.1  

>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
          Length = 221

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -2

Query: 246 YPAAR-----PSRDMQHTDEKSLRTLRKLALXTQL-AHHAQLWNGNGNAGLVSHXY 97
           +P+AR     P R +  T  K L T+ KLA   +L AH   L +  G   LV H +
Sbjct: 20  FPSARCCLPSPHRFLPSTRRKRLVTVAKLAFPAELKAHTLHLVDNGGELMLVHHCF 75


>07_03_0943 -
           22778877-22780970,22781376-22781480,22781481-22782059,
           22782149-22782187,22782340-22782372
          Length = 949

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 271 DERLFTLSLPRGPTVTRHATHRRKKFENVKKTRTXHTARTSCA 143
           D  +F    P G  +    T  +K  ++VKK +T  + R+SC+
Sbjct: 93  DSGIFGFDYPVGVGLAIPVTWTQKTSDHVKKEQTGFSGRSSCS 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,098,508
Number of Sequences: 37544
Number of extensions: 185340
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)