Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1422
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    43   4e-05
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   2.6  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -2

Query: 435 LXTLVNLFTQSH-FXXQAHLYLGXMLMCGFVLFXTQLIIEKRRMGSKDFVQXALELFIDF 259
           L  L+  F  S  F   A    G ++ CG++LF T  I+   R   ++F+  +L L++DF
Sbjct: 189 LTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLYLDF 246

Query: 258 IGMFRRLVIIL 226
           I +F R++ IL
Sbjct: 247 INLFIRILQIL 257


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 407 SHISXTKLIFIWASCSCAVLYYSXHNLS 324
           S+IS  K I +W SC C  L Y   N++
Sbjct: 132 SYISE-KRILVWCSCLCKALQYLHENVA 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,075
Number of Sequences: 5004
Number of extensions: 28927
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)