Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1422
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    50   2e-06
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    31   0.67 
04_04_0470 + 25474029-25475525                                         29   4.7  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 39/65 (60%)
 Frame = -2

Query: 420 NLFTQSHFXXQAHLYLGXMLMCGFVLFXTQLIIEKRRMGSKDFVQXALELFIDFIGMFRR 241
           ++F  S       +Y G ++  G++++ TQ IIE+   G  D+++ AL LF DF+ +  R
Sbjct: 168 SIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVR 227

Query: 240 LVIIL 226
           +++I+
Sbjct: 228 ILVIM 232


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 11/43 (25%), Positives = 28/43 (65%)
 Frame = -2

Query: 375 LGXMLMCGFVLFXTQLIIEKRRMGSKDFVQXALELFIDFIGMF 247
           LG ++  GF+++ T+ +I++      D++  ++EL++D + +F
Sbjct: 212 LGALVFSGFIIYDTENLIKRHTYD--DYIWASVELYLDILNLF 252


>04_04_0470 + 25474029-25475525
          Length = 498

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 413 LXSHISXTKLIFIWASCSCAVLYYSXHNLSLRNAEWEAKT 294
           L +H+    +IF W SC+   L+Y    L L     E +T
Sbjct: 407 LAAHVIQILVIFGWVSCTMGPLFYGLKKLGLLRISAEDET 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,030,372
Number of Sequences: 37544
Number of extensions: 180589
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)