Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1422
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    31   0.60 
AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    31   0.79 

>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -2

Query: 459 MTLFXXMSLXTLVNLFTQSHFXXQAHLYLGXMLMCGFVLFXTQLIIEKRR--MGSKDFVQ 286
           M LF       +  L     F    +  L  +LM  ++    QL++  R+  +  +D++ 
Sbjct: 161 MVLFSFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIF 220

Query: 285 XALELFIDFIGMFRRLVII 229
            A+E+F+D + +F  L+ I
Sbjct: 221 AAMEIFLDILNIFLMLLNI 239


>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 417 LFTQSHFXXQAHLYLGXMLMCGFVLFXTQLIIEKRRM--GSKDFVQXALELFIDFIGMFR 244
           +F    F    +  LG +L   ++    QLI+  RR+    ++++  A  +F+D +GMF 
Sbjct: 65  IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGMFL 124

Query: 243 RLV 235
            ++
Sbjct: 125 NIL 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,892
Number of Sequences: 27780
Number of extensions: 160992
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)