Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1418
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   0.70 
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   1.6  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   2.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.8  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   3.8  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   6.6  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 238 KGLNLESIKLIGTIGWIGLASQLSFAA--KTSGITSRSAISS 119
           K + +ES +   T+GW+ +    SF +  K SGI+S   + S
Sbjct: 272 KAVGIESGRYCETVGWVSINGIPSFKSLVKLSGISSLMGVES 313


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 48  RSTWCNRVITYIW--FLRNDRHVDW 116
           RS W +R++ ++W   +   +H+DW
Sbjct: 230 RSDWTSRLMDFLWDPVVYGQKHMDW 254


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  LFFKKHLVQ*SNYVYLVLTKRPTCGLVRTYC 130
           +FF K+++  SNY+YL+      C  +   C
Sbjct: 29  MFFLKNIIVLSNYLYLLYKAWIVCTTISLCC 59


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 203 YNRLDRSRVATFLRRKN*WNYIEKCNKF*PVH 108
           +N  +R+ +   L + + WN    C KF  +H
Sbjct: 346 HNNRERNTITPLLSQNDLWNIFFLCTKFWSLH 377


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 101 PTCGLVRTYCTSRCNSTSF 157
           P   ++RTY TS CN+  +
Sbjct: 70  PYTNMIRTYATSDCNTLEY 88


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 219  LSRFSPFTEPKENFAT 266
            +SRF PF+ PK   AT
Sbjct: 1013 ISRFEPFSSPKLKLAT 1028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,455
Number of Sequences: 5004
Number of extensions: 19480
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)