Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1418
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1399 - 33249210-33249359,33249521-33249597,33249735-332498... 32 0.087
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325... 28 1.4
04_04_0255 - 23959997-23960048,23960380-23960450,23960499-239605... 28 1.9
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 3.3
03_02_0015 + 4965894-4966214,4966339-4966387,4966504-4966890,496... 27 4.3
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 26 7.6
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 26 7.6
04_04_0322 - 24374624-24377698 26 7.6
>04_04_1399 -
33249210-33249359,33249521-33249597,33249735-33249814,
33249904-33250094,33250183-33250469,33250595-33250721,
33250878-33250994,33251085-33251198,33251510-33251671,
33252909-33252974,33253098-33253269,33253377-33253584,
33253728-33253776,33254132-33254305
Length = 657
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = -2
Query: 253 SFGSVKGLNLESIKLIGTIGWIGLASQLSFAAKTSGITSRSAISSNQSTCRSFRKNQIYV 74
+F S+K ++ K + IG + + + T+G SRSA++ N + C++ N I
Sbjct: 362 TFASLKDYQVDGNKEMMAIGLMNIVGSCTSCYVTTGAFSRSAVNHN-AGCKTAMSNVIMA 420
Query: 73 ITLLHQVL 50
+T++ +L
Sbjct: 421 LTVMVTLL 428
>03_01_0424 -
3253179-3253367,3253480-3253556,3253654-3253739,
3253844-3254321,3254393-3254519,3254624-3254740,
3254853-3254966,3256650-3256715,3257738-3258117,
3258217-3258496
Length = 637
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = -2
Query: 253 SFGSVKGLNLESIKLIGTIGWIGLASQLSFAAKTSGITSRSAISSNQSTCRSFRKNQIYV 74
SF K +++ K + G + + L+ T+G SRSA++ N + C++ N I
Sbjct: 327 SFAMFKNYHIDGNKEMIAFGTMNIVGSLTSCYLTTGPFSRSAVNYN-AGCKTAMSNVIMS 385
Query: 73 ITLLHQVL 50
+ ++ +L
Sbjct: 386 VAVMITLL 393
>04_04_0255 -
23959997-23960048,23960380-23960450,23960499-23960595,
23961189-23961277,23961510-23961635
Length = 144
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 23 TDLIVLFFKKHLVQ*SNYVYLVLTKRPTCGLVRTYCTSRCNSTSFCGEGKLRRETYPTYC 202
T ++ L +K L +N L +T C L Y T N C +G L R+TY YC
Sbjct: 38 TIVVQLTLRKKLFT-NNDKILKMTVHHLCQLPEMYSTHNGN-IRICIDGILCRQTYIGYC 95
Query: 203 -TY*FNTF*VQSFYGTKRKLCNCQ 271
Y F FY T ++ Q
Sbjct: 96 DAYIIRKF-TLIFYETNLRVFRAQ 118
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 84 WFLRNDRHVDWLELIALLDVIPLVFAAKESCD 179
W + RHV WL LL + LV AA + D
Sbjct: 320 WLRVDPRHVPWLRAAGLLPLCRLVEAAADDRD 351
>03_02_0015 +
4965894-4966214,4966339-4966387,4966504-4966890,
4966976-4967034,4967128-4967241,4967344-4967460,
4967558-4967684,4967764-4968050,4968148-4968338,
4968801-4968886,4968975-4969051,4969161-4969304
Length = 652
Score = 26.6 bits (56), Expect = 4.3
Identities = 23/77 (29%), Positives = 33/77 (42%)
Frame = -2
Query: 277 RRLTVAKFSFGSVKGLNLESIKLIGTIGWIGLASQLSFAAKTSGITSRSAISSNQSTCRS 98
R+ T+AKF + GL L S+ + IG+ LA+ S I + T R
Sbjct: 83 RQYTLAKFKGDLIAGLTLASLVIPQDIGYAKLANLPPEIGLHSSFVP-PLIYALMGTSRE 141
Query: 97 FRKNQIYVITLLHQVLL 47
+ VI+LL LL
Sbjct: 142 LAMGPVAVISLLLGTLL 158
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 220 SIKLIGTIGWIGLASQLSFAAKTSGITSRSAISSNQSTCRSFRKNQI 80
S ++GTIG++ +L R+A+S T + RK+ +
Sbjct: 853 SASMLGTIGYMAPVFELGLLCSADSPEQRTAMSDVVVTLKKIRKDYV 899
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 202 TIGWIGLASQLSFAAKTSGITSRSAISSNQST 107
T+G +G SQL ++GI S SA+++ +T
Sbjct: 108 TLGTLGFWSQLVCTTVSAGILSFSAVATGNAT 139
>04_04_0322 - 24374624-24377698
Length = 1024
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 74 YVYLVLTKRPTCGLVRTYCTSRCNSTSFCGEGKL 175
Y Y +L + TCG Y S CG+ KL
Sbjct: 364 YAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKL 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,803,681
Number of Sequences: 37544
Number of extensions: 110264
Number of successful extensions: 292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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