Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1418
         (320 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ496107-1|ABF47096.1|  555|Homo sapiens feline leukemia virus s...    32   0.44 
BC048312-1|AAH48312.1|  555|Homo sapiens feline leukemia virus s...    32   0.44 
AF118637-1|AAD45243.1|  555|Homo sapiens feline leukemia virus s...    32   0.44 
AB027122-1|BAB47149.1|  225|Homo sapiens HEIL2 protein.                28   7.2  
AK022281-1|BAB14000.1|  124|Homo sapiens protein ( Homo sapiens ...    27   9.5  

>DQ496107-1|ABF47096.1|  555|Homo sapiens feline leukemia virus
           subgroup C cellular receptor protein.
          Length = 555

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 105 HVDWLELIALLDVIPLVFAAKESCDARPIQ 194
           H+DWL ++ +L  +PL+F A    D R ++
Sbjct: 145 HIDWLSMVYMLAYVPLIFPATWLLDTRGLR 174


>BC048312-1|AAH48312.1|  555|Homo sapiens feline leukemia virus
           subgroup C cellular receptor 1 protein.
          Length = 555

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 105 HVDWLELIALLDVIPLVFAAKESCDARPIQ 194
           H+DWL ++ +L  +PL+F A    D R ++
Sbjct: 145 HIDWLSMVYMLAYVPLIFPATWLLDTRGLR 174


>AF118637-1|AAD45243.1|  555|Homo sapiens feline leukemia virus
           subgroup C receptor FLVCR protein.
          Length = 555

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 105 HVDWLELIALLDVIPLVFAAKESCDARPIQ 194
           H+DWL ++ +L  +PL+F A    D R ++
Sbjct: 145 HIDWLSMVYMLAYVPLIFPATWLLDTRGLR 174


>AB027122-1|BAB47149.1|  225|Homo sapiens HEIL2 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 126 IALLDVIPLVFAAKESCD-ARPIQPIVPISLILSRFSPFTEP 248
           ++LL + P+    K  C   R I P+VP    LS  +PF+ P
Sbjct: 35  VSLLILFPVTMDRKSPCTYGRAICPLVPWFPFLSDLAPFSMP 76


>AK022281-1|BAB14000.1|  124|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12219 fis, clone MAMMA1001078. ).
          Length = 124

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 LLDVIPLVFAAKESCDARPIQPIVPISLILSRFSPFTEPKENFATVSLLQI 284
           L+  IP +F   E  +  P      I +++ +    T  KENF T+SL+ I
Sbjct: 60  LVPFIPTLFQTTEKEELLPNSCYGAIIILIPKPGIDTTRKENFRTISLMNI 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,948,359
Number of Sequences: 237096
Number of extensions: 665357
Number of successful extensions: 1287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)