Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1413
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   1.4  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   4.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   4.1  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    24   9.5  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.5  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 346 VLSLVSGSNNISQRYLK*DSKIDICTHEQYL--*TPRYLIYSCLYPS-IYI 203
           V  L+SGS + S   LK DS  +  T+E  L    P+YL+  C+Y S IYI
Sbjct: 256 VKRLLSGSPSSSSSPLKKDSSSNSLTYEPALTDHKPQYLVL-CVYRSLIYI 305


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -3

Query: 250 TPRYLIYSCLYPSIYIA--ILSISI--KYYGVVDFYXVVKK-LFTIYKPLYGQIIVLGKA 86
           T  YL   CLY  +YI   I  I++  K  GV     +++  L+  +  +Y + ++ GK 
Sbjct: 148 TAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVAILAGIIQTVLYGDFAVVYRRTVLQGKK 207

Query: 85  KGIP 74
             +P
Sbjct: 208 FRLP 211


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = -3

Query: 235 IYSCLYPSIYIAILSISIKYYGVVDFYXVVKKLFTIYKPLYGQIIV 98
           I+  ++  + +AI  + +KY+G V+F+    K+  +   +   I++
Sbjct: 161 IWVAVFLVVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCIVI 206


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 246 GVYKYCSWVHIS 281
           GVYK  SW HI+
Sbjct: 110 GVYKIASWAHIT 121


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 277 ICTHEQYL*TPRYLIYSCLYP--SIYIAILSISIK 179
           IC H Q    P  L ++C++P  S ++ ++  +I+
Sbjct: 63  ICQHNQLNVAPHLLKWTCVWPNQSSHVEVIDYNIE 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,503
Number of Sequences: 5004
Number of extensions: 28695
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)