Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1413
         (390 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1063|AAF54473.3|  640|Drosophila melanogaster CG12807-P...    29   1.6  
BT029687-1|ABL75744.1|  486|Drosophila melanogaster IP17403p pro...    27   8.7  
AY052085-1|AAK93509.1|  403|Drosophila melanogaster SD03655p pro...    27   8.7  
AE014296-291|AAN11491.1|  403|Drosophila melanogaster CG12004-PB...    27   8.7  
AE014296-290|AAF47516.2|  403|Drosophila melanogaster CG12004-PA...    27   8.7  

>AE014297-1063|AAF54473.3|  640|Drosophila melanogaster CG12807-PA
           protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 47  TTTFRPLCVGYAFRLSQNNNLSI*R---FINRKQLFHYXIKIYHAVIFYR 187
           T  F P  +G A     N N  +     ++  +Q+ H   K+Y+AV++Y+
Sbjct: 423 TNDFEPHYIGEAAEGKSNYNTDVISHVFYLGNQQVVHTTFKVYNAVLYYK 472


>BT029687-1|ABL75744.1|  486|Drosophila melanogaster IP17403p
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI I+   S+S+  YG+  FY   + L T ++P+
Sbjct: 232 IYITIIYNISVSLALYGLYLFYFATRDLLTPFEPV 266


>AY052085-1|AAK93509.1|  403|Drosophila melanogaster SD03655p
           protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI I+   S+S+  YG+  FY   + L T ++P+
Sbjct: 232 IYITIIYNISVSLALYGLYLFYFATRDLLTPFEPV 266


>AE014296-291|AAN11491.1|  403|Drosophila melanogaster CG12004-PB,
           isoform B protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI I+   S+S+  YG+  FY   + L T ++P+
Sbjct: 232 IYITIIYNISVSLALYGLYLFYFATRDLLTPFEPV 266


>AE014296-290|AAF47516.2|  403|Drosophila melanogaster CG12004-PA,
           isoform A protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI I+   S+S+  YG+  FY   + L T ++P+
Sbjct: 232 IYITIIYNISVSLALYGLYLFYFATRDLLTPFEPV 266


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,787,419
Number of Sequences: 53049
Number of extensions: 265548
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1086986940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)