Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1413
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    27   3.6  
L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    23   5.5  
Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 68  CVGYAFRLSQNNNLSI*RFINRKQLFHYXIKIYHAVIFYRNR 193
           CV  AF ++Q   +++ +F++R+QL H  +K  +  + Y+NR
Sbjct: 273 CVQSAFHIAQEIFMAL-KFMHRRQLVHRDVKPTNIALSYQNR 313


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 68  CVGYAFRLSQNNNLSI*RFINRKQLFHYXIKIYHAVIFYRNR 193
           CV  AF ++Q   +++ +F++R+QL H  +K  +  + Y+NR
Sbjct: 273 CVQSAFHIAQEIFMAL-KFMHRRQLVHRDVKPTNIALSYQNR 313


>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 217 PSIYIAILSISIKY--YGVVDFYXVVKKLFTIYKPLYGQIIVLGKAKG 80
           P  Y+A+  ++  +  YG++  + V +K+F+++  ++  +    K +G
Sbjct: 266 PEYYLALQELNCAFPSYGIITVFLVSRKIFSVHNQIHSSLESQMKLQG 313


>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 23.0 bits (47), Expect(2) = 5.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 220 TNNYKSNTEGFINIARGYIYLSCYLI 297
           TNN  SN      I  G I  SC+LI
Sbjct: 130 TNNNDSNNNNNSVIPHGVINRSCHLI 155



 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 64  FMCRVCLSPFPKQ*FVHI 117
           +MCR C   FP +  +HI
Sbjct: 107 YMCRCCNWAFPDKSLLHI 124


>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI ++   SIS+  YG+  FY   + L + Y+P+
Sbjct: 183 IYITLVYNVSISLALYGMFLFYAATRDLLSPYRPV 217


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 211 IYIAIL---SISIKYYGVVDFYXVVKKLFTIYKPL 116
           IYI ++   SIS+  YG+  FY   + L + Y+P+
Sbjct: 183 IYITLVYNVSISLALYGMFLFYAATRDLLSPYRPV 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,433
Number of Sequences: 27780
Number of extensions: 147753
Number of successful extensions: 259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)