Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1413
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.31 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.54 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.54 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   8.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 250 TPRYLIYSC--LYPSIYIAILSISIKYYGVVDFYXVVKKLFTIYKPLYGQII 101
           TP+ L+ S   L P +    LS  + YY + D Y  +KK       L+GQ++
Sbjct: 258 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS-LHGQLL 308


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 291 SYLRYRCEMLLXPDTKLSTYL 353
           SYLR + +ML  P++ L T+L
Sbjct: 292 SYLRLKGQMLYIPESDLVTFL 312


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 291 SYLRYRCEMLLXPDTKLSTYL 353
           SYLR + +ML  P++ L T+L
Sbjct: 292 SYLRLKGQMLYIPESDLVTFL 312


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 205 YRY*GTNNYKSNTEGFINIARGY 273
           Y+Y   NNY +N   + N    Y
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNY 344


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 324 LTTFRSGTLNKIAR*IYVPTSNIYKPLGI*FIVVCTLVSISLYYLF 187
           +TT  +G  + + R  YV   +IY  +   F+    L   ++ Y +
Sbjct: 284 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTY 329


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 231 IVVCTLVSISLYYLFL 184
           IVV  LVSI +Y  F+
Sbjct: 405 IVVIALVSIIMYIAFI 420


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 41 NFTTTFRP 64
          +FTTTFRP
Sbjct: 69 DFTTTFRP 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,663
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)