Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1412
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    29   0.77 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.3  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    27   3.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.2  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 324 DGYAGVGILIKSHLPFSIISIPL 392
           D YAG GI I   +PF++I  P+
Sbjct: 217 DFYAGYGITIAREIPFTLIQFPI 239


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 183 AVVSKKPDLIYLINKLDPIIVCL 251
           AV+SK+  L+Y++N   PI++ L
Sbjct: 140 AVISKEKHLVYILNSFKPILLKL 162


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 415 VIEKESLCKGIEIIEKGR*DLMSMPTPAY 329
           VI +E L KGIE+I+K   DL ++    Y
Sbjct: 404 VITEEDLMKGIEVIKKSLNDLPTIDMTPY 432


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 329 PI*PVFSYNREARNFK-WKTWLKPGFLKTNNDGI*FIYQIN*IRFFADNRCGNSNEPP 159
           P+ PV     E+ + + WKTW+K G L      I  +  +    FF+ ++   +NE P
Sbjct: 7   PLLPVHGEGPESPSRRNWKTWIKHGILL-----ILVLSTVIFFYFFSSHKSKGTNEKP 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,165
Number of Sequences: 5004
Number of extensions: 38263
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)