Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1412
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0386 + 17031431-17031627,17031938-17031971                       29   3.2  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    29   4.2  
11_06_0089 - 19932292-19932909,19933628-19933830,19934003-19934192     28   7.4  
10_06_0172 + 11473892-11474896                                         28   7.4  

>11_04_0386 + 17031431-17031627,17031938-17031971
          Length = 76

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 264 LKPGFPFKIPGFSIVREDRSDGYAGVGILIKSHLPFSIISI 386
           L PG  F+IPG   + E  +   +G+ IL+ S + F++I+I
Sbjct: 17  LSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSIIYFALIAI 57


>09_06_0320 -
           22297579-22297760,22298433-22299358,22299422-22299747,
           22300591-22300660,22301632-22301726,22301917-22302048,
           22302154-22302222,22302953-22303051,22303169-22303253,
           22303353-22303453,22303660-22303728,22303861-22303901,
           22304085-22304303,22304444-22304470,22304562-22304660,
           22304898-22305106,22305382-22305485,22305753-22305894,
           22305991-22306289,22306508-22306903
          Length = 1229

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +3

Query: 201 PDLIYLINKLDPIIVCLQETWLKPGFPFKIPGFSIVREDRSDGYAGVGILIKSHLPFSII 380
           PD  YLI+ +DP +  L    L+     +IP    ++  R D  +   ILI     F + 
Sbjct: 144 PDGFYLIHGMDPFVWSLCTDLLEEN---RIPSIDSLKSVRPDDSSMQAILIDRRTDFDLG 200

Query: 381 SIPLHSDSFSITAVKVNNI 437
            +  ++ SF  ++  + ++
Sbjct: 201 MLENYASSFLSSSADMKDV 219


>11_06_0089 - 19932292-19932909,19933628-19933830,19934003-19934192
          Length = 336

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 303 IVREDRSDGYAGVGILIKSHLPFS 374
           I R D S GY GVG+  + H  F+
Sbjct: 283 IARSDSSGGYDGVGVAAEDHAEFA 306


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 438 CYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFNXSH 554
           C AS+Y P P     H+G  +   +P   L  G F   H
Sbjct: 27  CEASLYQPPPPAMAYHDGAVLEGAVPVSVLYYGAFPPHH 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,029
Number of Sequences: 37544
Number of extensions: 251412
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)