Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1412
(650 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 53 3e-07
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 52 5e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 1e-05
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 46 4e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 4e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 46 4e-05
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 42 7e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 42 7e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 42 0.001
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 38 0.016
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.19
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 34 0.19
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 34 0.19
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 34 0.19
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 34 0.19
M62472-1|AAA62769.1| 679|Drosophila melanogaster recombination ... 32 0.59
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 32 0.59
AY118605-1|AAM49974.1| 679|Drosophila melanogaster LP05366p pro... 32 0.59
AF073994-2|AAC27621.1| 679|Drosophila melanogaster recombinatio... 32 0.59
AE014134-522|AAF51175.1| 679|Drosophila melanogaster CG3178-PA ... 32 0.59
AY071018-1|AAL48640.1| 527|Drosophila melanogaster RE09574p pro... 29 7.2
AE013599-3095|AAF46648.1| 572|Drosophila melanogaster CG15651-P... 29 7.2
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 53.2 bits (122), Expect = 3e-07
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +3
Query: 207 LIYLINKLDPIIVCLQETWLKPGFPFKIP-GFSIVREDRSDGYAGVGILIKSHLPFSIIS 383
L+ LI K P I+ LQET ++ P + ++ ++ + GV +L+ + ++++
Sbjct: 20 LLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLN 79
Query: 384 IPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFNXSHMSW 563
I + ++ +I + S YI T + + P L+ GDFN H W
Sbjct: 80 ITIDIEAIAINIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPW 139
Query: 564 GSPXNNYYGR 593
GSP N G+
Sbjct: 140 GSPTTNKRGK 149
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 52.4 bits (120), Expect = 5e-07
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWLKPGFPFKIPGF-SIVREDRSDGYA--GVGI 347
A V +K P++ + + + ++ L ET K K+ GF + D S G A G I
Sbjct: 11 ADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAI 70
Query: 348 LIKS---HLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGPSILSHLPQ 518
LIK+ H P + I+ + ++ + I + ++Y P T E IL
Sbjct: 71 LIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQT 130
Query: 519 PFLLMGDFNXSHMSWGSPXNNYYG 590
F++ GD+N SH WG+ +N G
Sbjct: 131 KFIVAGDWNASHWLWGAGRSNQRG 154
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 48.0 bits (109), Expect = 1e-05
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWLKPGFPFKIPGFSIVREDRSDGYAG-VGIL- 350
A AV +K+ +LI + I + ETWL F IP ++I R DR + G V I
Sbjct: 19 ARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAV 78
Query: 351 -----------IKSHLPFSIISIPLHSDSFSITAVKVNNICYA---SIYIP--------H 464
IKSH+ + I +++DS S ++K+ +I +A S IP H
Sbjct: 79 SNTLIHEQIPCIKSHV-IENVGIQINTDSNS--SLKIYSIYFAGNTSKCIPSSCDLSWDH 135
Query: 465 PSLATLHEGPSI-LSHLPQPFLLMGDFNXSHMSWGSPXNNYYGR 593
L +L+ + +S + FL+ GDFN H +W N +G+
Sbjct: 136 NHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTRANGWGK 179
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = +3
Query: 204 DLIYLINKLDPIIVCLQETWLKPGFPFKIPGFSIVREDRSDGYA--GVGILIKSHLPFSI 377
+L ++ D ++ ET ++ G +PG+ + G + G ++IKS L S
Sbjct: 22 ELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSP 81
Query: 378 ISIPLHSDSFSITAV----KVNNICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFN 545
++ P+ ++ I V V + A++Y+P + + S+ + L F+ GD+N
Sbjct: 82 LT-PISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYN 140
Query: 546 XSHMSWGSP 572
H WG+P
Sbjct: 141 AKHAWWGNP 149
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = +3
Query: 204 DLIYLINKLDPIIVCLQETWLKPGFPFKIPGFSIVREDRSDGYA--GVGILIKSHLPFSI 377
+L ++ D ++ ET ++ G +PG+ + G + G ++IKS L S
Sbjct: 22 ELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSP 81
Query: 378 ISIPLHSDSFSITAV----KVNNICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFN 545
++ P+ ++ I V V + A++Y+P + + S+ + L F+ GD+N
Sbjct: 82 LT-PISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYN 140
Query: 546 XSHMSWGSP 572
H WG+P
Sbjct: 141 AKHAWWGNP 149
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 46.0 bits (104), Expect = 4e-05
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Frame = +3
Query: 204 DLIYLINKLDPIIVCLQETWL---KPGF--PFKIPGFSIVREDRSDGYAGVGILIKSHLP 368
+L LI P IV LQET L F P + G+ + G+G+LIK ++P
Sbjct: 19 ELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYNTSAKQGIGVLIKRNVP 78
Query: 369 FSI--ISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDF 542
+ I+ + + + +V NI A YIP + + + IL +L +L+GD
Sbjct: 79 HTYRNINSSILCSALQLNFEQVINIVNA--YIPPSQIFSSSDISEILQNLNGSTILLGDL 136
Query: 543 NXSHMSWGSPXNNYYGRE 596
N WGSP N G++
Sbjct: 137 NSWSPLWGSPRTNTRGKK 154
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 41.9 bits (94), Expect = 7e-04
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Frame = +3
Query: 240 IVCLQETWLKPGFPFKIPGFSIVREDRSDGYA--GVGILIKSHLPFSIISI--PLHSDSF 407
++ L ET L F IPG+ + DG A G GILI++ + ++ + S
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQST 91
Query: 408 SITAVKVNN--ICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFNXSHMSWGS 569
SI A+++NN A++Y P + + + L F+ GD+N H WGS
Sbjct: 92 SI-ALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGS 146
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 41.9 bits (94), Expect = 7e-04
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Frame = +3
Query: 240 IVCLQETWLKPGFPFKIPGFSIVREDRSDGYA--GVGILIKSHLPFSIISI--PLHSDSF 407
++ L ET L F IPG+ + DG A G GILI++ + ++ + S
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQST 91
Query: 408 SITAVKVNN--ICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFNXSHMSWGS 569
SI A+++NN A++Y P + + + L F+ GD+N H WGS
Sbjct: 92 SI-ALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGS 146
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 41.5 bits (93), Expect = 0.001
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 11/166 (6%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWLKPGFPFKIPGFSIVREDRSDGYA--GVGIL 350
A V +K +L +++ ++ L ET L + F+I + + DG A G IL
Sbjct: 11 ANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAIL 70
Query: 351 I----KSHLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLH-EGPSILSHLP 515
I K H L + S +I + A++Y P P L + L
Sbjct: 71 IRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCP-PRFTVLEAQFLDFFQALG 129
Query: 516 QPFLLMGDFNXSHMSWGSPXNNYYGRE--XTI--ANEXLXKLSPPS 641
F+ GD+N H WGS N G++ TI A L +SP S
Sbjct: 130 PHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGS 175
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 37.5 bits (83), Expect = 0.016
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Frame = +3
Query: 240 IVCLQETWLKPGFPFKIPGFSIVREDR----SDGYAGVGILIKS---HLPFSIISIPLHS 398
I+ + E LK G KI G++ R ++ GV + +++ H P +I
Sbjct: 32 ILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVRTTLRHFPQRVIETRHIQ 91
Query: 399 DSFSITAVKVNNICYASIYIPHPSLATLHEGPSILSHLPQPFLLMGDFNXSHMSWGSPXN 578
S A + ++ +++IY + I+ Q +L+ GD+N H WG N
Sbjct: 92 LSSVKVATGLGDLQFSAIYCSPSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCN 151
Query: 579 NYYGRE 596
+ GRE
Sbjct: 152 SPRGRE 157
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 33.9 bits (74), Expect = 0.19
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWL-KPGFPFKIPGFS--IVREDRSDGYAGVGI 347
A + +K +L I +D I+ + ET L ++PG+ + + S GV
Sbjct: 17 AGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVAT 76
Query: 348 LIKSHLPFSIISIPLHSD---SFSITAVKVNN-----ICYASIYIPHPSLATL-HEGPSI 500
++ S + + P+ + S I + NN I AS+Y P PSL L H +
Sbjct: 77 IVNSSIRHMALK-PIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLRWLPHHFTDV 134
Query: 501 LSHLPQP------FLLMGDFNXSHMSWG 566
L+ + F+L GD+N H WG
Sbjct: 135 LNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.9 bits (74), Expect = 0.19
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWL-KPGFPFKIPGFS--IVREDRSDGYAGVGI 347
A + +K +L I +D IV + ET L ++PG+ + + S GV
Sbjct: 17 AGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVAT 76
Query: 348 LIKSHLPFSIISIPLHSD---SFSITAVKVNN-----ICYASIYIPHPSLA-TLHEGPSI 500
++ S + + P+ + S I + NN I AS+Y P PSL+ + H +
Sbjct: 77 IVNSSIRHMALE-PIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLSWSPHHFTDV 134
Query: 501 LSHLPQP------FLLMGDFNXSHMSWG 566
L+ + F+L GD+N H WG
Sbjct: 135 LNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.9 bits (74), Expect = 0.19
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWL-KPGFPFKIPGFS--IVREDRSDGYAGVGI 347
A + +K +L I +D IV + ET L ++PG+ + + S GV
Sbjct: 17 AGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVAT 76
Query: 348 LIKSHLPFSIISIPLHSD---SFSITAVKVNN-----ICYASIYIPHPSLA-TLHEGPSI 500
++ S + + P+ + S I + NN I AS+Y P PSL+ + H +
Sbjct: 77 IVNSSIRHMALE-PIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLSWSPHHFTDV 134
Query: 501 LSHLPQP------FLLMGDFNXSHMSWG 566
L+ + F+L GD+N H WG
Sbjct: 135 LNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.9 bits (74), Expect = 0.19
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWL-KPGFPFKIPGFS--IVREDRSDGYAGVGI 347
A + +K +L I +D IV + ET L ++PG+ + + S GV
Sbjct: 17 AGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVAT 76
Query: 348 LIKSHLPFSIISIPLHSD---SFSITAVKVNN-----ICYASIYIPHPSLA-TLHEGPSI 500
++ S + + P+ + S I + NN I AS+Y P PSL+ + H +
Sbjct: 77 IVNSSIRHMALE-PIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLSWSPHHFTDV 134
Query: 501 LSHLPQP------FLLMGDFNXSHMSWG 566
L+ + F+L GD+N H WG
Sbjct: 135 LNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 33.9 bits (74), Expect = 0.19
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Frame = +3
Query: 282 FKIPGFSIVREDRSDGYAG-VGIL------------IKSHLPFSIISIPLHSDSFSITAV 422
F IP ++I R DR + G V I IKSH+ + I +++DS S ++
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHV-IENVGIQINTDSNS--SL 58
Query: 423 KVNNICYA---SIYIP--------HPSLATLHEGPSI-LSHLPQPFLLMGDFNXSHMSWG 566
K+ +I +A S IP H L +L+ + +S + FL+ GDFN H +W
Sbjct: 59 KIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWK 118
Query: 567 SPXNNYYGR 593
N +G+
Sbjct: 119 CTRANGWGK 127
>M62472-1|AAA62769.1| 679|Drosophila melanogaster recombination
repair protein protein.
Length = 679
Score = 32.3 bits (70), Expect = 0.59
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Frame = +3
Query: 198 KPDLIYLINKLDPIIVCLQETWLK----PGFPFKIPGFSIVREDRSDGYAGVGI---LIK 356
K D + LI+ +P I CLQET P ++PG+ GYAGV I ++
Sbjct: 442 KKDGLQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWLCMPGGYAGVAIYSKIMP 501
Query: 357 SHLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGP---------SILSH 509
H+ + I + ITA + ++Y+P+ ++ P + +
Sbjct: 502 IHVEYGIGNEEFDDVGRMITA-EYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKK 560
Query: 510 LP--QPFLLMGDFNXSHM--SWGSPXNN 581
L +P ++ GD N SHM +P NN
Sbjct: 561 LDALKPVVICGDMNVSHMPIDLENPKNN 588
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 32.3 bits (70), Expect = 0.59
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Frame = +3
Query: 177 AAAVVSKKPDLIYLINKLDPIIVCLQETWL-KPGFPFKIPGFS--IVREDRSDGYAGVGI 347
A + +K +L I +D I+ + ET L ++PG+ + + S GV
Sbjct: 29 AGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASSKRGGVAT 88
Query: 348 LIKSHLPFSIISIPLHSD---SFSITAVKVNN-----ICYASIYIPHPSLA-TLHEGPSI 500
++ S L + P+ + S I + NN I AS+Y P PSL+ + H +
Sbjct: 89 IVNSSLRHMALE-PIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLSWSPHHFTDV 146
Query: 501 LSHLPQPF------LLMGDFNXSHMSWG 566
L+ + +L GD+N H WG
Sbjct: 147 LNFAEKTMGGQTKLILCGDWNAKHRQWG 174
>AY118605-1|AAM49974.1| 679|Drosophila melanogaster LP05366p
protein.
Length = 679
Score = 32.3 bits (70), Expect = 0.59
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Frame = +3
Query: 198 KPDLIYLINKLDPIIVCLQETWLK----PGFPFKIPGFSIVREDRSDGYAGVGI---LIK 356
K D + LI+ +P I CLQET P ++PG+ GYAGV I ++
Sbjct: 442 KKDGLQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWLCMPGGYAGVAIYSKIMP 501
Query: 357 SHLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGP---------SILSH 509
H+ + I + ITA + ++Y+P+ ++ P + +
Sbjct: 502 IHVEYGIGNEEFDDVGRMITA-EYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKK 560
Query: 510 LP--QPFLLMGDFNXSHM--SWGSPXNN 581
L +P ++ GD N SHM +P NN
Sbjct: 561 LDALKPVVICGDMNVSHMPIDLENPKNN 588
>AF073994-2|AAC27621.1| 679|Drosophila melanogaster recombination
repair protein 1 protein.
Length = 679
Score = 32.3 bits (70), Expect = 0.59
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Frame = +3
Query: 198 KPDLIYLINKLDPIIVCLQETWLK----PGFPFKIPGFSIVREDRSDGYAGVGI---LIK 356
K D + LI+ +P I CLQET P ++PG+ GYAGV I ++
Sbjct: 442 KKDGLQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWLCMPGGYAGVAIYSKIMP 501
Query: 357 SHLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGP---------SILSH 509
H+ + I + ITA + ++Y+P+ ++ P + +
Sbjct: 502 IHVEYGIGNEEFDDVGRMITA-EYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKK 560
Query: 510 LP--QPFLLMGDFNXSHM--SWGSPXNN 581
L +P ++ GD N SHM +P NN
Sbjct: 561 LDALKPVVICGDMNVSHMPIDLENPKNN 588
>AE014134-522|AAF51175.1| 679|Drosophila melanogaster CG3178-PA
protein.
Length = 679
Score = 32.3 bits (70), Expect = 0.59
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Frame = +3
Query: 198 KPDLIYLINKLDPIIVCLQETWLK----PGFPFKIPGFSIVREDRSDGYAGVGI---LIK 356
K D + LI+ +P I CLQET P ++PG+ GYAGV I ++
Sbjct: 442 KKDGLQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWLCMPGGYAGVAIYSKIMP 501
Query: 357 SHLPFSIISIPLHSDSFSITAVKVNNICYASIYIPHPSLATLHEGP---------SILSH 509
H+ + I + ITA + ++Y+P+ ++ P + +
Sbjct: 502 IHVEYGIGNEEFDDVGRMITA-EYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKK 560
Query: 510 LP--QPFLLMGDFNXSHM--SWGSPXNN 581
L +P ++ GD N SHM +P NN
Sbjct: 561 LDALKPVVICGDMNVSHMPIDLENPKNN 588
>AY071018-1|AAL48640.1| 527|Drosophila melanogaster RE09574p
protein.
Length = 527
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +3
Query: 282 FKIPGFSIVREDRSDGYAGVGILIKSHLPFSIISIPLHSDSFSITAVKVNNICYASIYIP 461
+++PG + RE G+ G+++ S S+PL +D + C S+Y
Sbjct: 334 YRVPGKAQAREVWGQGH---GLVLDGQFSSSNTSLPLITDIDLFGCERTTKSCIGSVYNE 390
Query: 462 HPSLATL--HEGPSILSHLPQPF 524
P + L H P L L F
Sbjct: 391 RPYYSYLGKHTPPCCLDKLRTTF 413
>AE013599-3095|AAF46648.1| 572|Drosophila melanogaster CG15651-PA
protein.
Length = 572
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +3
Query: 282 FKIPGFSIVREDRSDGYAGVGILIKSHLPFSIISIPLHSDSFSITAVKVNNICYASIYIP 461
+++PG + RE G+ G+++ S S+PL +D + C S+Y
Sbjct: 334 YRVPGKAQAREVWGQGH---GLVLDGQFSSSNTSLPLITDIDLFGCERTTKSCIGSVYNE 390
Query: 462 HPSLATL--HEGPSILSHLPQPF 524
P + L H P L L F
Sbjct: 391 RPYYSYLGKHTPPCCLDKLRTTF 413
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,940,384
Number of Sequences: 53049
Number of extensions: 425402
Number of successful extensions: 829
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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