Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1410
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   0.38 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   3.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   4.7  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    24   8.2  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 173 LENSFILIQQIDVSAEILDNVQTHLDPYDI 262
           + NS   I  IDV+ E L N Q HL PY +
Sbjct: 451 ISNSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 314 TTQLXISMNSRVPNSLDRYHTDPNVFVRCQEFQQI 210
           T+ L ++MNS VP+S    ++ PN +      Q I
Sbjct: 243 TSALKVNMNSNVPSSDSVRNSSPNQYYASTSKQSI 277


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 290 NSRVPNSLDRYHTDPNVFVRCQEFQQIRLSVG 195
           N +  + +DRY  DP  F++  E  +I    G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 AEILDNVQTHLDPYDIDQD 271
           A +LD V+THL+P D D D
Sbjct: 124 ASLLDFVETHLNP-DTDPD 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,287
Number of Sequences: 5004
Number of extensions: 14423
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)