Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1407
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   2.4  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   2.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   4.2  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 156 DFLNSTVNSFFTLIQYFYF 212
           + L +T + F+ L QYFYF
Sbjct: 368 EVLKATTSKFYPLKQYFYF 386


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 KSHIXYPEADFLNSTVNSFFTLIQYFYFSYILFXL 233
           +  + Y   D L   V S+  ++ Y YFS+IL  L
Sbjct: 75  RGSLLYVGQDLLQEGVTSY--MVDYMYFSWILIFL 107


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 60  ISHTLLKLTYMKKKNPFDINKS*KSHIXYPEADFLNSTVNSFFTLIQYFYFSYILFXL 233
           + HTLLK+ +     PFD+         Y    FL    + FF  ++   F Y  F L
Sbjct: 710 VIHTLLKVIFSVVPLPFDVPVDNSVDFPYLRL-FLEKHADDFFRCLE-VAFDYPYFSL 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,902
Number of Sequences: 5004
Number of extensions: 12537
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)