Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1407
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660...    25   8.3  

>04_01_0505 +
           6599181-6599249,6599537-6599632,6599931-6599962,
           6601191-6601428,6601852-6601905,6601923-6602130,
           6602353-6602590,6602788-6602962,6603074-6603442
          Length = 492

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 138 IXYPEADFLNSTVNSFFTLIQY 203
           + YPE  F N T+N F T++ Y
Sbjct: 23  LIYPEELFRNITINLFKTILPY 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,312,409
Number of Sequences: 37544
Number of extensions: 54466
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)