Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1399
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   4.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.9  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 556 VGNRIRIDFVLFGNDMGHSPYIARPIKRSSRTVMKLSL--NNRLYIPFIIKKLK 401
           V N I     +  +++   PYI RPI   S +V K+++  +N   +P ++  L+
Sbjct: 568 VDNSISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPHNPSELPKLLDGLR 621


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 421 FIIKKLKSILFMGIQRYLKNKIRFLG 344
           F+  +   +++ GI RY+ N  RFLG
Sbjct: 525 FLPSRSPKLVYQGIYRYVNNPERFLG 550


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 475 RSSRTVMKLSLNNRLYIPFIIKKLKSILFMGIQRYLKNKIRFLG 344
           R   TV  +S+N       ++K       MG++ YL  ++RF+G
Sbjct: 280 RYCETVGWVSINGIPSFKSLVKLSGISSLMGVESYLAERLRFIG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,488
Number of Sequences: 5004
Number of extensions: 56834
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)