Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1399
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103...    31   1.1  

>08_02_0243 -
           14708055-14708416,14708487-14709324,14709482-14710323,
           14710466-14710520,14711535-14711549,14713030-14713033,
           14713340-14713424,14714045-14714084
          Length = 746

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/42 (23%), Positives = 29/42 (69%)
 Frame = -3

Query: 493 IARPIKRSSRTVMKLSLNNRLYIPFIIKKLKSILFMGIQRYL 368
           IAR IK  +  ++++++N+++++P  ++  +++   G+ RY+
Sbjct: 162 IARRIKYVNERLVQITMNSKMFVPLAMRSPQTLQRNGVSRYV 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,484
Number of Sequences: 37544
Number of extensions: 288796
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)