Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1399
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p4...    28   5.5  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    28   7.3  

>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 501 EWPMSFPNRTKSIRILLPTFVEVNHIWACVYL*INKYLETF 623
           +W  +F N  ++  + L T V + HI A +    + Y+E+F
Sbjct: 491 DWRKNFSNSNRNYTLKLDTNVTIEHILAAISEGFDNYMESF 531


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 352 FLGYLYHMICCQYTYTLTSSHSRR*FFFVVCSNC 251
           F+ YLY MICC   Y   S+++    F  +C +C
Sbjct: 247 FIPYLYIMICCYLNYHNQSANN----FAFICFSC 276


>AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p450
           family protein 31A3 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 478 KRSSRTVMKLSLNNRLYIPFIIKKLKSILF 389
           KR++  +M  S    LY  FIIKK+ SILF
Sbjct: 214 KRTNNPLMWNSFIYNLYDSFIIKKVNSILF 243


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 448 SLNNRLYIPFIIKKLKSILFMGIQRYLKNKIRFLG 344
           SLN  +++  ++ +L SIL+M I  YL  +I F G
Sbjct: 62  SLNPHVFLVIVVSQLTSILYM-ISDYLTIRIPFTG 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,509
Number of Sequences: 27780
Number of extensions: 303864
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)