Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1398
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.6  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    25   8.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.1  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 511 NDCFTDEECLLSVNXLRQHHMRLAGFKDLGYSFV 410
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -3

Query: 541 DLVVIQHTVSNDCFTDEE---CL----LSVNXLRQHHMR-LAGFKDLGYSFVAG 404
           +L ++ + + NDCFT  E   CL    LS N L +   +    F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 493 EECLLSVNXLRQHHMRLAGFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIGIG 317
           E+ +  V  L+Q + +  G +  G SF       +Y  AGW+HI  + L  +N S   G
Sbjct: 108 EQLVRRVCDLKQGYTQYGGLRPFGVSF-------LY--AGWDHIRGYQLFQSNPSGNYG 157


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 360 PIWFQPAPS*IFPLPPATNE*PKSLNPAR 446
           P + +PAP    PLPP T   P+   P R
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFR 65


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 603 ISPHSDAKVDNPAHVATIIKNRILFIVNK 689
           IS  +D+K+DN     T  +N+ILF ++K
Sbjct: 4   ISTSTDSKLDNLGLSVTSRRNQILFYLSK 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,619
Number of Sequences: 5004
Number of extensions: 65622
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)