Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1398
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    30   2.1  
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     29   3.6  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    28   6.4  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    28   6.4  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
 Frame = -3

Query: 454 HMRLAGFKDLGYSFV---AGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFIG--DFREKL 290
           H R +   + GYSFV    GG G+I+ G  W         Y ++S  I   G  D+ +  
Sbjct: 377 HARESVDDNTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPS 436

Query: 289 PTQQALQAVQ-DFLACGVENNLLTEDYHVVGHQQLINTLSPGAVLQSEIEKL 137
             Q A        + C  +  +   +Y   G    ++   P A   S+++ L
Sbjct: 437 RDQYASSLYSVSIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVL 488


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 694 VRLFTMNSILFLIIVATCAGLSTFASECGEI 602
           V LF   ++L ++ V  CAGL+ F  E G+I
Sbjct: 161 VLLFVPVTVLVIVAVCACAGLAIFCFEEGQI 191


>10_08_0371 + 17265691-17265788,17265873-17265971,17266586-17266628,
            17267250-17267321,17267400-17267495,17267609-17267842,
            17267914-17268097,17268247-17268358,17268447-17268533,
            17268703-17268841,17269628-17269718,17270045-17270154,
            17270309-17270413,17270982-17271055,17271379-17271454,
            17271786-17272022,17272419-17272490,17273082-17273153,
            17273240-17273304,17273306-17273383,17273384-17273486,
            17273769-17273858,17274873-17274980,17275063-17275113,
            17276126-17276203,17276284-17276346,17276944-17277140,
            17277243-17277312,17277640-17277828
          Length = 1030

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 517  VSNDCFTDEECLLSVNXLRQHHM--RLAGFKDLGYSFV--AGGNGKIYE 383
            ++ DC   + CL ++N L  +H   RL G   L    +   G NGK+ E
Sbjct: 877  LNKDCDIVDRCLTAINALASYHFKERLGGRGGLSSQLMESEGSNGKLQE 925


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 618 PNAAKFPSPNGVARSHVVNSP*RVLLTWW 532
           P+ A+F +P+   R H++ +    L  WW
Sbjct: 232 PSPARFTTPSATPRHHIITTKPSSLRIWW 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,423,905
Number of Sequences: 37544
Number of extensions: 439218
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)