Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1398
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.3  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.3  
AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    28   7.6  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
 Frame = -3

Query: 400 NGKIYEGAGWNHIGAHTLHYNNISIGIGFI------GDFREKLPTQQALQAVQDFLACGV 239
           N K+  G  W  I    LHY   SI +G+I      GD +E+ P Q+ L  +++ L  G+
Sbjct: 116 NKKLILGLVWTLI----LHY---SISMGWIQEKREDGDNKEETPKQKLLNWIRNRLP-GM 167

Query: 238 ENNLLTEDYHV-VGHQQLINTLSPGAV 161
             +  T D++  V    L+N+++PGA+
Sbjct: 168 PISNFTSDWNDGVALGALVNSMAPGAL 194


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 169 GAVLQSEIEKLAPLA**CSKKYWVNILFTQRID 71
           GA   SE+ ++AP A  C   +W N+L+    D
Sbjct: 358 GAFSASELNQMAPQAAACKTLWWQNLLYINNFD 390


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 33   IQCNIKSDYSNTRSIRCVNKILTQYFFEHYQANGANFSISDCSTAPGLSVFINC 194
            +QCN K  Y+  R  RC +      FF H Q +G + S   C+    L+   +C
Sbjct: 1903 LQCNCKPGYTGDRCDRCASG-----FFGHPQISGESCSPCQCNGNNNLTDSRSC 1951


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 33   IQCNIKSDYSNTRSIRCVNKILTQYFFEHYQANGANFSISDCSTAPGLSVFINC 194
            +QCN K  Y+  R  RC +      FF H Q +G + S   C+    L+   +C
Sbjct: 1903 LQCNCKPGYTGDRCDRCASG-----FFGHPQISGESCSPCQCNGNNNLTDSRSC 1951


>U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical
           protein ZK682.2 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 670 ILFLIIVATCAGLSTFASECGEIPITEWSGTESR 569
           I+F +I A C     F   CG   + +W  T S+
Sbjct: 447 IVFAVIAAICVVTGIFFQCCGTASLQDWDSTHSK 480


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 33   IQCNIKSDYSNTRSIRCVNKILTQYFFEHYQANGANFSISDCSTAPGLSVFINC 194
            +QCN K  Y+  R  RC +      FF H Q +G + S   C+    L+   +C
Sbjct: 1903 LQCNCKPGYTGDRCDRCASG-----FFGHPQISGESCSPCQCNGNNNLTDSRSC 1951


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 33   IQCNIKSDYSNTRSIRCVNKILTQYFFEHYQANGANFSISDCSTAPGLSVFINC 194
            +QCN K  Y+  R  RC +      FF H Q +G + S   C+    L+   +C
Sbjct: 1903 LQCNCKPGYTGDRCDRCASG-----FFGHPQISGESCSPCQCNGNNNLTDSRSC 1951


>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 208 VVGHQQLINTLSPGAVLQSEIEKLAPLA**CSKK 107
           V+G+QQL++ L P A LQ  +  L+ +   C  K
Sbjct: 215 VIGYQQLLSLLDPSATLQDPMITLSAVLSACPHK 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,586,545
Number of Sequences: 27780
Number of extensions: 369132
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)