Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1397
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.86 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.1  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   8.0  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 193 IEATHLNK*ILCRLSLAIKLMNILLLKYALITNVNE 86
           I A+ L+K I+C LSL+I  +N+ LL  A + ++ E
Sbjct: 523 ISASFLSKWIVCALSLSI-AVNVFLLNAARLNSIKE 557


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 684 RGSDVASNPVAPACPTVTAYERRLTRVDSYYRCIAPRASSLPILKPLV 541
           RG  + S  V P  P+    ++R  RVD + R      S LPI  P +
Sbjct: 241 RGPSIPSASVPPVPPSSYVLQQRPNRVDDHGRFHFKDDSYLPIPHPFL 288


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 LLRCVASIESKASNLTSNFSKLACIS 248
           L  C+ S E +ASN+     + ACI+
Sbjct: 913 LRSCILSTEERASNMKEIIQRFACIT 938


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 580 ATSVVAAYSKAISILKEFLDGGEFDHDLFTSARS-ASLFEVVENEKSPADVV 428
           A + V A+++   +   +L    +DHD+F+ A S AS  +  E+  SP   V
Sbjct: 241 AANNVFAFNQKDMVDSTYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEV 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,816
Number of Sequences: 5004
Number of extensions: 44663
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)