Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1397
         (707 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein.       31   4.0  
AB002371-1|BAA20828.2| 1540|Homo sapiens KIAA0373 protein.             31   4.0  

>DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein.
          Length = 2479

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 135  SFIAKLNRHNIYLLRCVASIESKASNLTSNFSKLACISLTLD 260
            S IAKL++HN+ L    A+   K  ++TS   K+   +L L+
Sbjct: 1198 SLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLE 1239


>AB002371-1|BAA20828.2| 1540|Homo sapiens KIAA0373 protein.
          Length = 1540

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 135 SFIAKLNRHNIYLLRCVASIESKASNLTSNFSKLACISLTLD 260
           S IAKL++HN+ L    A+   K  ++TS   K+   +L L+
Sbjct: 259 SLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLE 300


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,811,064
Number of Sequences: 237096
Number of extensions: 1485772
Number of successful extensions: 3071
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3071
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)