Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1397
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    60   2e-09
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
            protein C05D11.1 protein.
          Length = 995

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 32/125 (25%), Positives = 63/125 (50%)
 Frame = -2

Query: 604  RLILSLYRATSVVAAYSKAISILKEFLDGGEFDHDLFTSARSASLFEVVENEKSPADVVG 425
            ++ LSLYR      AY +   I+++ ++ GE     F  A+ +++FE+++ E + +    
Sbjct: 856  QITLSLYRCAQPAVAYERTRDIIRKIVESGEISKAEFEGAKRSTVFEMMKREGTVSGAAK 915

Query: 424  LSLLKYVERVGEQYNKELVSAISCVSAEXVQGAARRWLPALFDLSQSTVCVVCHPSKVNE 245
            +S+L    +    +N +L   I  +++E +       L  LFD       +  HPSK+NE
Sbjct: 916  ISILNNFRQTPHPFNIDLCRRIWNLTSEEMVKIGGPPLARLFDEKCFVRSIAVHPSKLNE 975

Query: 244  IQASF 230
            ++ +F
Sbjct: 976  MKKAF 980


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 514 EFDHDLFTSARSASLFEVVENEKSPADVVGLSLLKYVERVGEQYNKELVSAISCVSAEXV 335
           E +H   T  + A+  E VE E        + L  + + + +Q+N EL +A+S   A   
Sbjct: 330 EKEHAKQTHLKLAAAVENVEAELEKQGKEWIQLSTHNQTL-KQHNLELEAALSVAKARDQ 388

Query: 334 QGAARRW 314
            G A++W
Sbjct: 389 DGEAQKW 395


>AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical
           protein T25D3.4 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 LTNSLLYCSPTRSTYFRRDKPTTS 437
           L NS L  +PT S YFRR  P+ S
Sbjct: 508 LINSTLPHTPTPSKYFRRSSPSLS 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,985
Number of Sequences: 27780
Number of extensions: 249496
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)