Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1397
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 504 TIYSRRPEVLLCLR*WRTR 448
           T+YS+RP++L     W  R
Sbjct: 659 TLYSKRPDLLHLFGSWSNR 677


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 504 TIYSRRPEVLLCLR*WRTR 448
           T+YS+RP++L     W  R
Sbjct: 659 TLYSKRPDLLHLFGSWSNR 677


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 504 TIYSRRPEVLLCLR*WRTR 448
           T+YS+RP++L     W  R
Sbjct: 659 TLYSKRPDLLHLFGSWSNR 677


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 IVIKFSTVQKFFQYTNGFR 556
           ++I  +T+  FF  +NGFR
Sbjct: 333 VMIGVTTMLNFFTTSNGFR 351


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 IVIKFSTVQKFFQYTNGFR 556
           ++I  +T+  FF  +NGFR
Sbjct: 302 VMIGVTTMLNFFTTSNGFR 320


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 IVIKFSTVQKFFQYTNGFR 556
           ++I  +T+  FF  +NGFR
Sbjct: 353 VMIGVTTMLNFFTTSNGFR 371


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 IVIKFSTVQKFFQYTNGFR 556
           ++I  +T+  FF  +NGFR
Sbjct: 302 VMIGVTTMLNFFTTSNGFR 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,900
Number of Sequences: 438
Number of extensions: 3200
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)