Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1394
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.0  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   2.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   3.4  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    27   3.4  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.9  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 518 PSRKSARELAAMKSHLGANAASMGRCPGPIKLKSNSD 408
           P+     +L A + HL   +  M   P PI +KSN D
Sbjct: 342 PTPAQIHQLKAQQQHLQRQSKQMSE-PAPINMKSNKD 377


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 554 KRAIRLTVKLLKPSRKSARELAAMKS 477
           K  +RL + LL+PS+ S  ++AAMK+
Sbjct: 115 KATLRLFIHLLQPSQPSMLQVAAMKT 140


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 595 TFAPSTAHISTCLSIFCASCASNENFMVILLPHLAI 702
           TF     H   C  +FC  C+S      + LPHL I
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSK----TLSLPHLGI 215


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 395 QSRRKTRKCNKNKQVKLAKDKGRRNR 318
           +S++KT K   +K  KLAK++G R+R
Sbjct: 3   KSQKKTAKGRLDKWYKLAKEQGYRSR 28


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 392 FGRKSNRCWT 421
           FGRKSN CWT
Sbjct: 9   FGRKSNFCWT 18


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 397 SQVESLLDFSFIGPGHLPID 456
           S+ ESLLDF  +  G+LP+D
Sbjct: 199 SEYESLLDFRALILGNLPVD 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,924
Number of Sequences: 5004
Number of extensions: 45547
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)