Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1394
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0104 - 688053-688233,688310-688581,689544-689885                 30   2.0  
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    29   2.7  
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741...    29   3.6  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    29   3.6  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    29   4.7  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   4.7  
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    28   6.2  
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    28   8.3  

>05_01_0104 - 688053-688233,688310-688581,689544-689885
          Length = 264

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 434 PIKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKDKGRRNR 318
           P+    +S +   Q R K+RK +KNKQ +  K KGR  +
Sbjct: 151 PVTSVCHSVNNSYQRRSKSRKKDKNKQKQKQKQKGRSKK 189


>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -3

Query: 530 KLLKPSRKSARELAAMKSHLGANAASMGRCPGPIKLKSNSDSTCDQSRRKTR 375
           K LK  R+ A++    K   G++A S G+    IKL  +SDS  D +++K +
Sbjct: 214 KTLKDDRRHAKK---GKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKKKK 262


>05_07_0274 -
           28873531-28873644,28873727-28873981,28874111-28874179,
           28874277-28874415,28874511-28875076,28875225-28875326,
           28875425-28875491,28875576-28876072,28876148-28876212,
           28876470-28876567,28876652-28876694,28876870-28876963,
           28877325-28877360,28877454-28877542,28877667-28877788,
           28878193-28878404
          Length = 855

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 548 AIRLTVKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIKLKSNSDSTCDQSRRKTRKC 369
           A R   +LLK  R+   E  A ++   A  A     P   K K NS++   + + K RK 
Sbjct: 717 AYRPVRELLKREREKEMERRANEAKEKAATAENSESPESKKEKENSENPESKEKEKERKE 776

Query: 368 N-KNKQVK 348
           N +NK+ K
Sbjct: 777 NSENKEEK 784


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 533 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIKLKSNSDSTCDQSRRK 381
           + LL+PS  +A   A+ +SHL A  AS     GP ++  N  +   Q R +
Sbjct: 322 IDLLQPSTSTASTFASSQSHLKAITASKRMKSGPNQVWMNIPANTFQPRAR 372


>11_01_0346 -
           2589111-2589220,2589613-2589852,2589956-2590028,
           2590301-2590606,2590698-2590912,2591461-2591755,
           2591901-2592065,2592142-2592738,2593029-2593115,
           2593203-2593523,2594047-2596071
          Length = 1477

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -3

Query: 548 AIRLTVKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIKL 423
           A+ L +K+ K SR SAR+LAA  S L   A     C G + L
Sbjct: 46  ALHLLIKIPK-SRASARQLAAFNSPLQLAAVVFNGCLGLLNL 86


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 421 SPTAIRLATKVGAKLGNVTRISKSSLLKIRVAEIASKDMGCFENFTIIINEQCLFVDSHL 242
           SP  +R A+ + +KLG   R+ ++S   + +AEI  +    F    + +  Q L V S +
Sbjct: 628 SPQLLRCASVIASKLGWSERMEEASRCLVLLAEILQERFAEFYGMFVDVLAQSLEVASSV 687

Query: 241 YL 236
            L
Sbjct: 688 QL 689


>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
            20164566-20166466,20166557-20166650,20166953-20167440,
            20167919-20168599,20168870-20168944,20170148-20170210,
            20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 600  ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKAK 421
            EC S+ + R+ K      D ANC  V + +       +   S+ + C IN     TD   
Sbjct: 1583 ECISEIDSRNDKAKNPSVDHANCADVDSSKMTGDNCTQRSYSNENACLINIRDHSTDSGA 1642

Query: 420  VQQRF 406
            V  RF
Sbjct: 1643 VDSRF 1647


>04_04_0927 +
           29467121-29467168,29467518-29467604,29468180-29468269,
           29468547-29468741,29469056-29471080,29471208-29471354,
           29471520-29471923,29472015-29472144
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 628 CLSIFCASCASNENFMVILLP 690
           C S+FC+SC SN+  M  L P
Sbjct: 635 CGSMFCSSCTSNKITMAALAP 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,247
Number of Sequences: 37544
Number of extensions: 267780
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)