Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1394
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 31 0.80
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine re... 29 2.4
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF039053-12|AAC25872.3| 289|Caenorhabditis elegans Serpentine r... 29 4.3
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 28 5.6
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 28 5.6
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 28 5.6
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 28 5.6
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = -2
Query: 639 NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 490
N AC + + G WS+C +K R T + P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184
Query: 489 -RYEKSSWSECSINGE 445
+Y+ WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = -2
Query: 639 NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 490
N AC + + G WS+C +K R T + P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184
Query: 489 -RYEKSSWSECSINGE 445
+Y+ WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Frame = -2
Query: 639 NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 496
N R+ G WSEC KT ++R ++ K G+ N CE + +++ R
Sbjct: 472 NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 531
Query: 495 TC------RYEKSSWSECS 457
C R+E S WSECS
Sbjct: 532 PCHREDCPRWEASQWSECS 550
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
F53B6.2a protein.
Length = 1045
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Frame = -2
Query: 639 NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 496
N R+ G WSEC KT ++R ++ K G+ N CE + +++ R
Sbjct: 806 NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 865
Query: 495 TC------RYEKSSWSECS 457
C R+E S WSECS
Sbjct: 866 PCHREDCPRWEASQWSECS 884
>AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine
receptor, class t protein24 protein.
Length = 362
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 131 YLNTIGIVLMLELFSRIYVLLIVV 60
Y T+GIVLM+ +F IYV ++V
Sbjct: 47 YFLTVGIVLMVSMFQMIYVPCLIV 70
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 522 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKAKVQQRFDLRPK*AQNSE 373
K ++K KR +K+ + SIN EMSR DK V + K A++++
Sbjct: 285 KKKEEKEKRRKEVKKNREEQLSINPEMSRNDKKDVVEEKSCLDKGAKDAQ 334
>AF039053-12|AAC25872.3| 289|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 18 protein.
Length = 289
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 266 LFINNYRKIFKAAHVL----TGDFCDPYL*QA*LAYSCYISEFCAYFGRKSNRC----WT 421
+F +NYRK+ + +L + + + A Y+ Y+SE CA G N C WT
Sbjct: 117 IFYHNYRKLCPSIFILLIAVSYGLAENLVLHAVCNYTIYLSENCAALGCAVNSCFNKYWT 176
Query: 422 LALSVL 439
++ +L
Sbjct: 177 ISKLIL 182
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 640
FW +L + QL P F + L E HS TYRH + F
Sbjct: 45 FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 640
FW +L + QL P F + L E HS TYRH + F
Sbjct: 45 FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 588 KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 478
+T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 39 RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 72
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 588 KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 478
+T +R + K+ + NC +V TI+ CK+ CRY K
Sbjct: 31 RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 64
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Frame = -2
Query: 609 AWSECDSKTNIRSRKLTLKKG-----DPAN-CEVV----KTIQKKCKRTCRYEKSSWSEC 460
+WS +SK + + TLK G P N E++ KT QK+CK C + +
Sbjct: 124 SWSGIESKVSYVYKNKTLKMGFACYVGPLNRSEIINWSNKTQQKRCKERCLVQPTRKPSL 183
Query: 459 SINGEMSRTDKAKV 418
+ SR A V
Sbjct: 184 KTSAATSRATDAPV 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,147
Number of Sequences: 27780
Number of extensions: 252102
Number of successful extensions: 765
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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