Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1394
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.92 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 540 PDRPFSESTSLSGYSFWSHIRSKHRAHIDMPL 635
           PD+P S S S +  S  S  RS+ +   DMP+
Sbjct: 589 PDKPASSSASSAPTSVCSSPRSEDKEVEDMPV 620


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 353 LAYSCYISEFCAYFGRKSNRC 415
           L+Y+C   + C    R+ NRC
Sbjct: 142 LSYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 353 LAYSCYISEFCAYFGRKSNRC 415
           L+Y+C   + C    R+ NRC
Sbjct: 142 LSYACREEKSCIIDKRQRNRC 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,331
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)