Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1393
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 KMFTCFNV*TDFNLVSGQWNFISCSLF 288
           K+F    +  D+++ +G W ++SCS F
Sbjct: 396 KVFDELLLDADWSVNAGMWMWLSCSSF 422


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 281 LQLIKFHCPETKLKSVQTLKQVNILQYFNSPLL 183
           L +   H P+TKL  +  + +V    YFN  ++
Sbjct: 142 LSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVM 174


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 281 LQLIKFHCPETKLKSVQTLKQVNILQYFNSPLL 183
           L +   H P+TKL  +  + +V    YFN  ++
Sbjct: 142 LSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVM 174


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 68  LVL*WISFFINKN 30
           +++ W+SF++N+N
Sbjct: 235 VIISWVSFWLNRN 247


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 68  LVL*WISFFINKN 30
           +++ W+SF++N+N
Sbjct: 235 VIISWVSFWLNRN 247


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 68  LVL*WISFFINKN 30
           +++ W+SF++N+N
Sbjct: 174 VIISWVSFWLNRN 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,963
Number of Sequences: 438
Number of extensions: 2408
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)