Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1392
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 214 VTLQYNISTQSISYDLESVLYKEPRSARVLL 122
           + + YN  T S  YD+   LY E  S  V++
Sbjct: 415 IMVNYNPETVSTDYDMSDRLYFEEISFEVVM 445


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 159 YFIKNQDQQGYYYYKSNIL 103
           YF+++ +   YYYY   +L
Sbjct: 223 YFMEDVELNAYYYYMREML 241


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 159 YFIKNQDQQGYYYYKSNIL 103
           YF+++ +   YYYY   +L
Sbjct: 223 YFMEDVELNAYYYYMREML 241


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 IFILLGYLHFYTSIRNY 327
           IFI+L Y    +SIRN+
Sbjct: 234 IFIILFYSRLLSSIRNH 250


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 IFILLGYLHFYTSIRNY 327
           IFI+L Y    +SIRN+
Sbjct: 234 IFIILFYSRLLSSIRNH 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,871
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)