Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1390
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    29   2.7  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    29   2.7  
09_06_0366 + 22596192-22596392,22599777-22599875,22599962-226004...    28   6.3  
08_01_0680 - 5958066-5960253,5960707-5961503                           28   8.3  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    28   8.3  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 277 FQKDLSGKALSIST*LSVSIQMTFRHLHKLNSLC 176
           FQ DL+ K   +ST L+ SI    +HL  + +LC
Sbjct: 558 FQADLASKLDILSTTLATSIDQQNKHLKSVENLC 591


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 156  LIEIFALEVRLRIYST*YYIPFTYIFLYVCLVSYL 52
            L  +F L V+  + ST ++IPF ++F  VC+V  L
Sbjct: 1718 LSTLFCLPVQF-LMSTEFFIPFVHLFYVVCVVQAL 1751


>09_06_0366 +
           22596192-22596392,22599777-22599875,22599962-22600411,
           22600630-22601154
          Length = 424

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 110 LSIIFHLLTFFYMCVLCPILIL 45
           L+++ HLLTF + CV+ P  +L
Sbjct: 249 LALVAHLLTFSFYCVVIPACVL 270


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 184  SLCNVIGRISH*DICSRSTITYLLNLVLYSIYLHFFICVSCVLS 53
            SL      I H   C R +  +LLN +L  ++  F +C+S VLS
Sbjct: 931  SLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCIS-VLS 973


>04_04_1183 -
           31537196-31537290,31537665-31537986,31538176-31538277,
           31538826-31539071,31539385-31539506,31539588-31540344,
           31540447-31540770,31540872-31541052,31541208-31541602,
           31541877-31541942,31542225-31542377,31542593-31542691,
           31542776-31542982,31543432-31543572,31543852-31544019,
           31544302-31544395,31544479-31544585,31545140-31545274,
           31545549-31545656,31545975-31546049,31546197-31546262,
           31546500-31546556,31546678-31546702,31546809-31546889,
           31546966-31547080,31547211-31547370,31547444-31547483,
           31547599-31547780,31547905-31548234
          Length = 1650

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 156 LIEIFALEVRLRIYST*YYIPFTYIFLYVCLVSYLNLEIKL 34
           ++ + ALE R+ IY   +YI F  I++ V   +  NL + +
Sbjct: 124 MLVMIALETRIYIYEFRWYIRFVVIYILVGEAAMFNLVLSV 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,365
Number of Sequences: 37544
Number of extensions: 279565
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)