Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1389
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   4.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   5.4  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   5.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   7.2  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   7.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   9.5  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = -2

Query: 487 IDVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRI 308
           I  + +  ++ SE+   V  +     K+ + E E   L  + TN++     Y     KRI
Sbjct: 380 ISAEEMNQKYISEQTQLVEEALTKVMKEKYREKEN-NLELLETNLKTHHKDYKHALKKRI 438

Query: 307 SVLAEKVSAKYKESRKNKLKRTFVQA 230
           + L E+ +   KE    K+K+  + A
Sbjct: 439 TALEEEKNRLIKEIGPEKVKKAGILA 464


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 524 NPNVFSIT*VFISRVISRRSKQNKTRVFFFFFLITP 631
           N  +FS     +SR+ S+    NK+++ +F +L++P
Sbjct: 70  NDALFSKLSNLVSRLKSQTVIHNKSQILYFLYLLSP 105


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 13  FFRPNIYLFKWVNELTAH 66
           F RP++Y  +W N LT H
Sbjct: 205 FLRPDLYRDEWFNLLTVH 222


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 369 CASVTNSASGKSSLCSKRKL-RLTSHCSSDSCSVLNEST 482
           C++++N  +G+     K+   +L++ C S +CS+L ++T
Sbjct: 259 CSALSNGENGEDVADGKQFCQKLSTACGSIACSMLTKTT 297


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 511 FIFFKSQCIFYYVGIYFESDFEAF 582
           F+FFK +    YVG+  E D  +F
Sbjct: 356 FLFFKEEAFVEYVGLPNEGDLVSF 379


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 346 LGCRYPPQTMKRI-SVLAEKVSAKYKESR--KNKLKRTFVQASDAAEQKAKRTF 194
           +GC Y   ++ +I S +   V+ + +  R  K +L+  FVQ S   EQ+  R+F
Sbjct: 815 MGCDYSSVSILQIVSQIEHFVNQQIQTIRSLKQELRHDFVQFSGKKEQELSRSF 868


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 337 RYPPQTMKRISVLAEKVSAKYKESRKNKLKRTFVQASDAAEQK 209
           R    +M+R S L EKV+A   E  K KL   F  ++D + QK
Sbjct: 422 RLQKDSMRRSSPLNEKVTAS-SERMKKKL-ALFASSTDTSMQK 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,078
Number of Sequences: 5004
Number of extensions: 45300
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)