Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1389
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    29   2.4  
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212...    28   7.4  
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743...    28   7.4  

>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = +3

Query: 207 AFCSAASLACTKVRFNLFFLLSLYLADTFSANTEMRFIV*GGYLHPKNSILV*ICASVTN 386
           + C+  S +   + ++LF  L    +   S N E+R        HP  + L    A  +N
Sbjct: 720 SLCARVSNSNDAIAYSLFKKLERDNSVNCSVNDEVR-----DSCHPIGAHLSITHAEDSN 774

Query: 387 SASGKSSLCSKRKLRLTSH-----CSSDSCS 464
            + G SS CSK     ++H     CSS++CS
Sbjct: 775 DSFGCSSCCSKNVADSSNHTERVKCSSEACS 805


>11_06_0435 -
           23519908-23520054,23520398-23520514,23521152-23521263,
           23521491-23521540,23522001-23522129,23522289-23522375,
           23523635-23523679,23523817-23523887,23523925-23524005,
           23524547-23524602,23526489-23526595
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 367 IYTNIEFLGCRYPPQTMKRISVLAEKVSAKYKESRKNKLK 248
           ++ N E L  R P Q + ++ + AEK   K +   K K+K
Sbjct: 275 VFINEEILKARTPHQVLMKVEIPAEKFHDKNENLMKVKMK 314


>06_03_1008 +
           26873805-26873891,26874038-26874107,26874237-26874334,
           26874505-26874643,26874778-26874860,26875145-26875195,
           26875305-26875370,26875465-26875530,26875637-26875717,
           26876042-26876119,26876218-26876394,26876467-26876545,
           26876752-26876870,26877029-26877430
          Length = 531

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 385 LVTLAQIYTNIEFLGCRYPPQTMKRISVLAEKVSAKYKESRKNKLKRTF 239
           ++ L  +Y +++        +  KR    AEK+SA Y+  ++ +L RTF
Sbjct: 192 IINLVDMYFDMQKYDAIKALEIYKRAGYQAEKLSAFYEHCKRLELARTF 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,369
Number of Sequences: 37544
Number of extensions: 263885
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)