Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1389
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008293-1|AAH08293.1|  116|Homo sapiens similar to RIKEN cDNA A...    44   4e-04
BC018086-1|AAH18086.1|   85|Homo sapiens MGC13017 protein protein.     38   0.023
BC022270-1|AAH22270.1|  579|Homo sapiens CDKN2A interacting prot...    37   0.072
AK000043-1|BAA90902.1|  580|Homo sapiens protein ( Homo sapiens ...    37   0.072
AF246705-1|AAF68967.1|  631|Homo sapiens putative serine-rich pr...    37   0.072
AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17 ...    30   8.2  

>BC008293-1|AAH08293.1|  116|Homo sapiens similar to RIKEN cDNA
           A430101B06 gene protein.
          Length = 116

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
 Frame = -2

Query: 478 DSLRTEHESEEQWEVRRSFLLEHKDDF---PEA-----ELVTLAQIYTNIEFLGCRYPPQ 323
           +  R+  ESE+QW+ R  F+L H  D+   P+      +L++L+ ++ N  FLGC Y   
Sbjct: 25  EQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGRLDQLLSLSMVWANHLFLGCSYNKD 84

Query: 322 TMKRISVLAEKVSAK 278
            + ++  +A+ +  +
Sbjct: 85  LLDKVMEMADGIEVE 99


>BC018086-1|AAH18086.1|   85|Homo sapiens MGC13017 protein protein.
          Length = 85

 Score = 38.3 bits (85), Expect = 0.023
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = -2

Query: 478 DSLRTEHESEEQWEVRRSFLLEHKDDF---PEA-----ELVTLAQIYTNIEFLGC 338
           +  R+  ESE+QW+ R  F+L H  D+   P+      +L++L+ ++ N  FLGC
Sbjct: 25  EQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGRLDQLLSLSMVWANHLFLGC 79


>BC022270-1|AAH22270.1|  579|Homo sapiens CDKN2A interacting protein
           protein.
          Length = 579

 Score = 36.7 bits (81), Expect = 0.072
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 24/89 (26%)
 Frame = -2

Query: 481 VDSLRTEHESEEQWEVRRSFLLEHKDDFPEA------------------------ELVTL 374
           V++LR + E+++ W  RR FLL +  D   A                        +L++ 
Sbjct: 19  VEALRCDGETDKHWRHRRDFLLRNAGDLAPAGGAASASTDEAADAESGTRNRQLQQLISF 78

Query: 373 AQIYTNIEFLGCRYPPQTMKRISVLAEKV 287
           +  + N  FLGCRYP + M +I  +AE +
Sbjct: 79  SMAWANHVFLGCRYPQKVMDKILSMAEGI 107


>AK000043-1|BAA90902.1|  580|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20036 fis, clone COL00219. ).
          Length = 580

 Score = 36.7 bits (81), Expect = 0.072
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 24/89 (26%)
 Frame = -2

Query: 481 VDSLRTEHESEEQWEVRRSFLLEHKDDFPEA------------------------ELVTL 374
           V++LR + E+++ W  RR FLL +  D   A                        +L++ 
Sbjct: 19  VEALRCDGETDKHWRHRRDFLLRNAGDLAPAGGAASASTDEAADAESGTRNRQLQQLISF 78

Query: 373 AQIYTNIEFLGCRYPPQTMKRISVLAEKV 287
           +  + N  FLGCRYP + M +I  +AE +
Sbjct: 79  SMAWANHVFLGCRYPQKVMDKILSMAEGI 107


>AF246705-1|AAF68967.1|  631|Homo sapiens putative serine-rich
           protein protein.
          Length = 631

 Score = 36.7 bits (81), Expect = 0.072
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 24/89 (26%)
 Frame = -2

Query: 481 VDSLRTEHESEEQWEVRRSFLLEHKDDFPEA------------------------ELVTL 374
           V++LR + E+++ W  RR FLL +  D   A                        +L++ 
Sbjct: 70  VEALRCDGETDKHWRHRRDFLLRNAGDLAPAGGAASASTDEAADAESGTRNRQLQQLISF 129

Query: 373 AQIYTNIEFLGCRYPPQTMKRISVLAEKV 287
           +  + N  FLGCRYP + M +I  +AE +
Sbjct: 130 SMAWANHVFLGCRYPQKVMDKILSMAEGI 158


>AL354798-1|CAI16633.1|  633|Homo sapiens ring finger protein 17
           protein.
          Length = 633

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 508 LHTMKPSIDVDSLRTEHESEEQWEVRRSFLLEHKDDFP 395
           +H MKP  D D    ++E EEQWE+R   LL  + D P
Sbjct: 374 IHIMKPRSDHDK---KYE-EEQWEIRFEELLSAETDTP 407


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,344,314
Number of Sequences: 237096
Number of extensions: 1479767
Number of successful extensions: 3276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)