Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1389
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical pr...    68   5e-12
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    36   0.033
AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical ...    32   0.41 
AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine re...    29   3.8  
Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical
           protein R05D11.6 protein.
          Length = 335

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/96 (33%), Positives = 61/96 (63%)
 Frame = -2

Query: 484 DVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRIS 305
           DV++ +   ES++ WE+R++F+L H DD+P+ +L  L+Q++ N+  LGC Y    M++I 
Sbjct: 6   DVEAEKKLWESDDAWELRKAFMLAHYDDYPKIQLQCLSQLFINVTLLGCEYSQTLMQKIR 65

Query: 304 VLAEKVSAKYKESRKNKLKRTFVQASDAAEQKAKRT 197
            +   ++A  K+  K     ++V+AS A +++A +T
Sbjct: 66  TMGAGIAAN-KDRTKT---GSYVKASAAKKRQAVKT 97


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical protein
            D1044.6 protein.
          Length = 1009

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 23/72 (31%), Positives = 44/72 (61%)
 Frame = -2

Query: 610  KKNSSFILF*TPRNHSRNKYLRNRKYIGI*KK*TLHTMKPSIDVDSLRTEHESEEQWEVR 431
            KKN+  +L  +P++  ++   R+RKYIG+ +K    +++ ++DV  L T+++ + QW + 
Sbjct: 904  KKNAFDVL--SPQD-VKDMEARHRKYIGLVQKERKFSLEQALDVCKL-TDYD-KRQWTIL 958

Query: 430  RSFLLEHKDDFP 395
               L+ H  DFP
Sbjct: 959  HDQLVTHFKDFP 970


>AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.5 protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 23/82 (28%), Positives = 43/82 (52%)
 Frame = +1

Query: 262 FCSPCTWRTLSRPIPKCVSLFEXDICILKIRYWYRFAPVSLIQLLENRLCVLKGNYV*LP 441
           FC+P T+  LS  + K V +   ++ +L I   +   P+S+I + ENR  +L   +V   
Sbjct: 71  FCTP-TFSGLSLGVLKWVGI-PTEVLVLVISTIFMLVPISIILMFENRYFIL---FVRND 125

Query: 442 TVPQIRAPFLTNLRL*KVSLCV 507
           +   +R PFL    +  +++C+
Sbjct: 126 SWRYLRYPFLIINYIIGITVCI 147


>AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical
           protein Y94A7B.9 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 262 FCSPCTWRTLSRPIPKCVSLFEXDICILKIRYWYRFAPVSLIQLLENRLCVLKGN 426
           FCSP  +      I + V     D+ ++     ++  PVS+I + ENR  VL GN
Sbjct: 71  FCSPA-FAGFPLGIVQWVKGIPMDVLVVCATAIFKVVPVSIISMFENRYFVLFGN 124


>Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.9 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 361 YRFAPVSLIQLLENRLCVLKGNYV*LPTVPQIRAPFLTNLRL*KVSLCVMFIF 519
           +R  PVS+I + ENR  VL   +V       +R PFL    +  ++ C+   F
Sbjct: 102 FRLVPVSIIAMFENRYFVL---FVRKGAWRYVRYPFLIANHILAIAYCISVYF 151


>AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine
           receptor, class h protein297 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 331 DICILKIRYWYRFAPVSLIQLLENRLCVL 417
           DI  L IR  Y   P+S+I + ENR  +L
Sbjct: 90  DISELTIRTLYMLVPISIITMFENRYYIL 118


>Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK1037.8 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 331 DICILKIRYWYRFAPVSLIQLLENRLCVLKG 423
           D  IL IR  +   PVS+I + ENR  VL G
Sbjct: 90  DAQILAIRAVFMLVPVSIIFMFENRYFVLFG 120


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 280 KYKESRKNKLKRTFVQASDAAEQKA 206
           KY+E  + KL  T  + SDA +Q+A
Sbjct: 56  KYREETQKKLNETLSKVSDAVKQRA 80


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 EQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLG 341
           EQW+  RS LLEH  D    EL    +I  ++   G
Sbjct: 229 EQWKGARSVLLEHLSDVKIEELKDFNEIQMHVRDSG 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,155
Number of Sequences: 27780
Number of extensions: 252735
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)