Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1389
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.27 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 409 KDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRISVLAEKVSAK 278
           K    EA L   A+   N+  L   +PP   KR+  L E + AK
Sbjct: 443 KSSIEEANLAVSAEREKNVSLLHLIFPPDIAKRL-WLGETIEAK 485


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 450 RNSGKLDVVSF*NTKTIFQKLN 385
           R +GK D V F  TK I  K+N
Sbjct: 133 REAGKTDEVVFRQTKAIANKIN 154


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 536 IHWDLKKINITHNETFY 486
           + WD+ K+    NE FY
Sbjct: 200 VEWDIIKVPAVRNEAFY 216


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 400 FPEAELVTLAQIYTNIEFLGC 338
           FP   L+ L  I   I F GC
Sbjct: 50  FPSITLIVLGSIIFVISFFGC 70


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 373 PVSLIQLLENRLCVLKGNYV*LPTVPQIRAPF 468
           P  L  L +  +CV K +   +PT  +I  PF
Sbjct: 65  PDGLKLLSDGLMCVEKVSTTIVPTTQEINKPF 96


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 536 IHWDLKKINITHNETFY 486
           + WD+ ++    NE FY
Sbjct: 208 VEWDILEVPAVRNEKFY 224


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 536 IHWDLKKINITHNETFY 486
           + WD+ ++    NE FY
Sbjct: 208 VEWDILEVPAVRNEKFY 224


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 536 IHWDLKKINITHNETFY 486
           + WD+ ++    NE FY
Sbjct: 204 VEWDILEVPAVRNEKFY 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,714
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)